Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y54F10BM.3
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Query: Y54F10BM.3 CE27012 status:Partially_confirmed TR:Q95XL1 protein_id:AAK68894.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 148.6 3.8e-41 1
7tm_3 7 transmembrane receptor (metabotropi 4.4 2.5 1
FMO-like Flavin-binding monooxygenase-like 4.3 2.3 1
mRNA_cap_enzyme mRNA capping enzyme, catalytic domain 1.3 1.6 1
Tuberin Tuberin 0.4 6.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
7tm_3 1/1 127 140 .. 1 15 [. 4.4 2.5
FMO-like 1/1 124 141 .. 519 536 .] 4.3 2.3
Tuberin 1/1 376 388 .. 769 781 .] 0.4 6.3
mRNA_cap_enzyme 1/1 546 554 .. 204 212 .] 1.3 1.6
Y_phosphatase 1/1 401 644 .. 1 274 [] 148.6 3.8e-41
Alignments of top-scoring domains:
7tm_3: domain 1 of 1, from 127 to 140: score 4.4, E = 2.5
*->lgivlvalAvlGLiv<-*
++i+lv+++++G i+
Y54F10BM.3 127 WSILLVTISIFG-IC 140
FMO-like: domain 1 of 1, from 124 to 141: score 4.3, E = 2.3
*->LKvfaavvllvaiflall<-*
+K+++++ ++++if ++
Y54F10BM.3 124 MKLWSILLVTISIFGICH 141
Tuberin: domain 1 of 1, from 376 to 388: score 0.4, E = 6.3
*->VIAmWFirCrLpf<-*
VIA WF C+ +f
Y54F10BM.3 376 VIANWFEWCQPEF 388
mRNA_cap_enzyme: domain 1 of 1, from 546 to 554: score 1.3, E = 1.6
*->rdqnlLKWK<-*
+++ LKWK
Y54F10BM.3 546 THFQFLKWK 554
Y_phosphatase: domain 1 of 1, from 401 to 644: score 148.6, E = 3.8e-41
*->NkeKNRykdilpyDhtRVkLkegsDYINAnyidgpqsrtlvvykkpk
N++ +R + + + D+t + +++++I+A+ ++ p +
Y54F10BM.3 401 NPKLCRDPKVQAWDSTSYLV-DDTHFIHASTVTAP------GKEYIG 440
ayIaTQgPlp.......nTieDFWrMvweqkvtvIVMLtklvEkgreeeK
+ I++Q+P +++++++++T e FWrMvw+ ++t++VM ++++E+g +K
Y54F10BM.3 441 KAIICQAPFDdkekghpDTRESFWRMVWDTRATYVVMCCQIMENGV--QK 488
tCaqYWPeeggeeggsltyGditVtlvseekkddddytvRtleltn.gde
C +Y+P+ e g +++yG +V l +++++++ + +R++elt ++
Y54F10BM.3 489 -CGRYFPD---ETGATENYGFAEVQLLEKHEMLNGHLLTRKIELTSgTWK 534
s.k.neakqeklkgetrtVthyhytgWPDhgvPesg..pkslldflrkvr
+++ + rt+th++++ W++ e + + +++ + ++ r
Y54F10BM.3 535 HsDdD--------PPIRTITHFQFLKWKEGEGLEGEmsMDAFNYVNHRTR 576
ksqsqenesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqql
+ Pi+VH+S G GR+++f++++++ q++
Y54F10BM.3 577 NNLD--------------------PIIVHSSLGTGRACAFVGAEYMFQMI 606
eaegvvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
+ ++ R R g+ Q+ Q+ ++ +++ e
Y54F10BM.3 607 NTKKCG-TARFFQVDFRTKRLGALQNGKQLFWVQNMAFE 644