Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y54E10A.17
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Query: Y54E10A.17 CE30044 status:Confirmed TR:Q8WTL3 protein_id:AAK68516.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DOMON DOMON domain 32.6 2.3e-07 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DOMON 1/1 28 122 .. 1 108 [. 32.6 2.3e-07
Alignments of top-scoring domains:
DOMON: domain 1 of 1, from 28 to 122: score 32.6, E = 2.3e-07
*->cdyevsWnvdgdkiqiefeltvktntnrytalGFSGdddgqMnnaDv
+d++++W+v + ++e+ + n n + a+GF+ M+++ v
Y54E10A.17 28 GDISARWQVVDGELTVEVTTKNVGN-NEWSAVGFG----PDMSDLIV 69
ivcwvdgngrvtvkDsyiqtpgksppveDeviGddqqdvtlldgriedGv
+++ v + ++++ ++ t g++ p D + +vtl++ ++ +
Y54E10A.17 70 VIFQVV-DFKPSLVTGT--TQGYGAPALD-----ASPSVTLQSLDYNSNT 111
ltckfrRklvt<-*
l ++f R++++
Y54E10A.17 112 LVARFARPVGS 122