Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y53C10A.9
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Query: Y53C10A.9 CE22377 ABC transporters status:Partially_confirmed TR:Q9XW49 protein_id:CAA22142.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 318.6 7.3e-92 2
DUF589 Family of unknown function (DUF589) 3.8 6.1 1
Per1 Per1-like 3.5 4.9 1
SRP54 SRP54-type protein, GTPase domain 3.4 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Per1 1/1 229 255 .. 286 314 .] 3.5 4.9
ABC_tran 1/2 477 658 .. 1 199 [] 164.7 1.5e-46
SRP54 1/1 1280 1291 .. 8 19 .. 3.4 7.3
DUF589 1/1 1411 1421 .. 166 176 .] 3.8 6.1
ABC_tran 2/2 1275 1450 .. 1 199 [] 154.0 2e-43
Alignments of top-scoring domains:
Per1: domain 1 of 1, from 229 to 255: score 3.5, E = 4.9
*->LATIPlsiyLydffveilDyavfrttvli<-*
L TI l+ L+ f +e ++ v+++t+li
Y53C10A.9 229 LTTIGLP--LWMFYLEHFLFGVIKNTFLI 255
ABC_tran: domain 1 of 2, from 477 to 658: score 164.7, E = 1.5e-46
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
G+v l+G+NG+GKST + +i+G+ + teG++ + G d + +
Y53C10A.9 477 GQVSILLGHNGCGKSTTFGMITGMHQATEGKVMIGG-IDANANR--A 520
erlerlrknigvvfQdptlfpnpeltvreniafglrls..lglskdeqrd
e++e+ ig+++Q ++ eltv+e +++ l++++g s+ ++++
Y53C10A.9 521 EAREL----IGYCPQYNPIYD--ELTVWEHLRLVNALKgrSGGSDFKMDA 564
rlkkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklL
+ lL++ l+ ++++ +++LSGG+k++++ ++a++ ++++
Y53C10A.9 565 E-------SLLKQIELT--DKRNTLAKNLSGGMKRKLCVCMAMIGGSRVI 605
lLDEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDrilv
lLDEPTag Dp +r ++++ + +l + +T+ll+tH++d++++l D+i+v
Y53C10A.9 606 LLDEPTAGMDPSARIDVQN-MLALVKADRTILLTTHYMDEAEKLGDWIFV 654
ledG<-*
+++G
Y53C10A.9 655 MSHG 658
SRP54: domain 1 of 1, from 1280 to 1291: score 3.4, E = 7.3
*->lVGlqGsGKTTT<-*
++G +G+GKTTT
Y53C10A.9 1280 MLGANGAGKTTT 1291
DUF589: domain 1 of 1, from 1411 to 1421: score 3.8, E = 6.1
*->eeWkrileLag<-*
e+W++i+e+ +
Y53C10A.9 1411 EIWDIIHEMRE 1421
ABC_tran: domain 2 of 2, from 1275 to 1450: score 154.0, E = 2e-43
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
e + +G NGaGK+T + +i+Gl++pt G+ ++dG +d++
Y53C10A.9 1275 EECFGMLGANGAGKTTTFDIITGLTMPTGGSATIDG-HDITETI--- 1317
erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
+ig+++Q++ + +++ r+++++ + l ++++
Y53C10A.9 1318 --------HIGYCPQFDAMLQ--QISCRQTLRIMAKL---QGYPNVKEV- 1353
kkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklLlL
+e +L+ +g+ ++ ++ +++ SGGqk++++ aL+ +++ ++L
Y53C10A.9 1354 ----VELVLDCVGMS--DFGYKLVKNCSGGQKRKISVGIALMSRATCIIL 1397
DEPTagLDpasraqllellrelrqq.ggTvllitHdldlldrlaDrilvl
DEPTag+Dp +r++++++++e r+q ++++l++H++++ ++l++ri +l
Y53C10A.9 1398 DEPTAGIDPRARREIWDIIHEMREQaKCSIVLTSHSMEECEALCTRIGIL 1447
edG<-*
++G
Y53C10A.9 1448 RKG 1450