Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y48G1A.3
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Query:  Y48G1A.3  CE26999    status:Partially_confirmed TR:Q9N3Q8 protein_id:AAF60684.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
zf-MYND  MYND finger                                     37.6    4.2e-11   1
ank      Ankyrin repeat                                  31.0    4.8e-07   2
zf-HIT   HIT zinc finger                                 14.3      0.044   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ank        1/2      40    72 ..     1    33 []    11.0     0.26
ank        2/2      74   106 ..     1    33 []    20.1  0.00063
zf-HIT     1/1     319   347 ..     3    33 .]    14.3    0.044
zf-MYND    1/1     321   357 ..     1    43 []    37.6  4.2e-11

Alignments of top-scoring domains:
ank: domain 1 of 2, from 40 to 72: score 11.0, E = 0.26
                   *->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                       G++ L  Aa rgnl +v+  ++   d+n ++d
    Y48G1A.3    40    SGMSVLAAAAYRGNLTLVEKAIELKCDVNDKTD    72

ank: domain 2 of 2, from 74 to 106: score 20.1, E = 0.00063
                   *->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                        +TPL+ Aa++g  +v++lL++ GA   +++
    Y48G1A.3    74    TLYTPLMFAALSGKQDVCRLLMDSGARMYLVNG    106

zf-HIT: domain 1 of 1, from 319 to 347: score 14.3, E = 0.044
                   *->efCvvPvCegnp.akYkCprCgvpYCSLrCyk<-*
                      +fC+  vC g+p+ak +C  C++ YCS +C+k
    Y48G1A.3   319    QFCS--VC-GHPgAKKRCTQCKLAYCSQECQK    347

zf-MYND: domain 1 of 1, from 321 to 357: score 37.6, E = 4.2e-11
                   *->CanCgkeatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      C +Cg   +k    k+C +Ck  +YCS+eCQ+ dW+  Hk+ C
    Y48G1A.3   321    CSVCGHPGAK----KRCTQCK-LAYCSQECQKFDWP-IHKKVC    357



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