Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y48G10A.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y48G10A.1  CE25312   putative esterase status:Partially_confirmed TR:Q9TVN2 protein_id:CAB63414.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Esterase Putative esterase                              204.7    1.4e-57   1
Hfq      Host factor Hfq                                  6.0          3   1
LolA     Outer membrane lipoprotein carrier protein L     3.7        7.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Hfq        1/1      16    25 ..    49    58 ..     6.0        3
LolA       1/1      85    93 ..   193   201 .]     3.7      7.9
Esterase   1/1      13   272 ..     1   308 []   204.7  1.4e-57

Alignments of top-scoring domains:
Hfq: domain 1 of 1, from 16 to 25: score 6.0, E = 3
                   *->qLiYKHAIST<-*
                      q++YKHA ST
   Y48G10A.1    16    QFVYKHASST    25

LolA: domain 1 of 1, from 85 to 93: score 3.7, E = 7.9
                   *->PKGVDVidq<-*
                      P+GVDV+++
   Y48G10A.1    85    PRGVDVDGD    93

Esterase: domain 1 of 1, from 13 to 272: score 204.7, E = 1.4e-57
                   *->ggpveylrhnSeslgrerkvqvyLPpdYyppgrkyPvlylLDGLrAq
                       g++ +++h+S+++++e+++ vy P++  +p +k+P+l++L+GL
   Y48G10A.1    13    KGRQFVYKHASSTTQCEMTFGVYIPDH--KPDEKLPALFYLSGL--- 54

                   ddatgwfqngpakealdrliaegeippviiVgvPaG.dessfysdwdlgq
                      t++  n+  k+++++ ++++++++v ++++P+G d++ + ++wd+g
   Y48G10A.1    55 ---TCTHANFMEKSGFQQFASKHRLVVVHPDTSPRGvDVDGDSESWDFGK 101

                   GarfylrategpgaeayeMYtfltqELlPlldanfptspdgdrralaGqS
                   Ga+fy++at + +a++y+MY+++ +ELl  +  + +  + ++   ++G+S
   Y48G10A.1   102 GAGFYVNATVEKWAKNYRMYDYIVKELLEEVVPSVAPIDLAK-IGIFGHS 150

                   mGGlgALylAlkyPerFgsVssfSPivnPssafgpvaIgaaLsdAGGydA
                   mGG+gAL ++l++  +F+s+s+f+Pi+nP
   Y48G10A.1   151 MGGHGALTIGLRNSSKFQSISAFAPICNPI-------------------- 180

                   gsmWGppafsaylg.eddpaWqegdpvllaqalsasnralrIyldvGtre
                    ++WG++a ++ylg+ed+ +W ++d+    +  ++s++   I++d+G  +
   Y48G10A.1   181 TVPWGQKALTGYLGdEDKSTWNQYDASEVLK--AYSGPKREILVDQGAAD 228

                   dflgdqlpveildelapnrelaeqlaargvgghdheypfpqnGgHdwayd
                    fl+ ql++e l      ++  + ++ r +  +dh+y+
   Y48G10A.1   229 NFLA-QLKPETLK-----SKENAEIVVRMQAEFDHSYY------------ 260

                   mWraaLiaalidl<-*
                    ++a+++a++  +
   Y48G10A.1   261 -FIASFMADHFEH    272



[DB home][top]