Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y48B6A.1
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Query: Y48B6A.1 CE22116 status:Partially_confirmed TR:Q9U2A9 protein_id:CAB54439.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 86.5 8.4e-23 5
Terpene_synth_C Terpene synthase family, metal bindin 3.6 4.7 1
aldo_ket_red Aldo/keto reductase family 2.4 6.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
aldo_ket_red 1/1 118 137 .. 350 369 .] 2.4 6.7
WD40 1/5 334 373 .. 1 39 [] 32.8 1.5e-07
WD40 2/5 377 416 .. 1 39 [] 7.2 3
WD40 3/5 451 481 .. 1 32 [. 2.4 71
Terpene_synth_C 1/1 463 491 .. 316 348 .] 3.6 4.7
WD40 4/5 579 617 .. 1 39 [] 27.7 4.4e-06
WD40 5/5 630 673 .. 1 39 [] 16.3 0.0077
Alignments of top-scoring domains:
aldo_ket_red: domain 1 of 1, from 118 to 137: score 2.4, E = 6.7
*->ddfeLteedmkkideldrgk<-*
+d Lt+e+++ki ++ +gk
Y48B6A.1 118 TDVKLTDEQIEKIHNIATGK 137
WD40: domain 1 of 5, from 334 to 373: score 32.8, E = 1.5e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ +gHt+ v+++ + p+ g++lasg++Dgt+++W
Y48B6A.1 334 TTLAFYMrGHTGQVRAITVEPERGELLASGGEDGTVRIWM 373
WD40: domain 2 of 5, from 377 to 416: score 7.2, E = 3
*->geclatl.gHtspvtcvafspd.sgpylasgSrDgtiklWd<-*
g c++t++ + vt+v+fsp +++++la + + + + + +
Y48B6A.1 377 GRCIKTFqMD-GEVTSVSFSPVaDRTLLAVAYEGKYVAILN 416
WD40: domain 3 of 5, from 451 to 481: score 2.4, E = 71
*->geclatl.gHtspvtcvafspdsgpylasgSrD<-*
+ + l+ + v+ v ++ g y+as D
Y48B6A.1 451 SKEKLMLkMP-NEVRQVTWHSK-GDYFASVAID 481
Terpene_synth_C: domain 1 of 1, from 463 to 491: score 3.6, E = 4.7
*->vadvfYkhggDgythpneghkikdyitsllvep<-*
v +v++ +gD + + i+d+++s++v++
Y48B6A.1 463 VRQVTWHSKGDYFASV----AIDDIAKSVYVHQ 491
WD40: domain 4 of 5, from 579 to 617: score 27.7, E = 4.4e-06
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ + l++Ht++v++va++ +p+la+ S+Dgt ++
Y48B6A.1 579 NKPWKKLkHHTAAVRSVAYHKK-YPLLATVSDDGTAMVYY 617
WD40: domain 5 of 5, from 630 to 673: score 16.3, E = 0.0077
*->geclatl.gHtspvtcvafspd....sgpylasgSrDgtiklWd<-*
+++ l++H+++ ++++ + + + +p+l+++++Dgti l+
Y48B6A.1 630 LYPVKRLrAHEKTPNDLCMLHTtwhpTQPWLITAGADGTIALFT 673