Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y47H10A.1
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Query: Y47H10A.1 CE24374 locus:clp-3 status:Partially_confirmed TR:Q9U2B2 protein_id:CAB60389.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C2 Calpain family cysteine protease 313.6 2.3e-90 1
Calpain_III Calpain large subunit, domain III 91.0 8.6e-26 1
DUF504 Protein of unknown function (DUF504) 7.7 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF504 1/1 166 179 .. 60 75 .] 7.7 1.8
Peptidase_C2 1/1 151 447 .. 1 344 [] 313.6 2.3e-90
Calpain_III 1/1 469 617 .. 1 163 [] 91.0 8.6e-26
Alignments of top-scoring domains:
DUF504: domain 1 of 1, from 166 to 179: score 7.7, E = 1.8
*->veIrnkkdgevVWkkk<-*
v++r + +VWk++
Y47H10A.1 166 VKVR--PKDHIVWKRP 179
Peptidase_C2: domain 1 of 1, from 151 to 447: score 313.6, E = 2.3e-90
*->LFeDpsFPaapkSLgykplgpassktrgieWkRPhEInenpqAYPPW
LFeDp+FPa+++S++ k ++ +i+WkRP E+ +np+
Y47H10A.1 151 LFEDPQFPANNSSIYVKVRPK-----DHIVWKRPGELFANPR----- 187
FivgGasRtDIcQGaLGDCWLLAAiAsLtlneeLlkrVvPhdqsfqenWR
i + +D+ G L + W+L+ A+L+l++eL+ rVvP dqsf+e
Y47H10A.1 188 LIGSDKTHFDVKLGRLENRWFLSGAANLSLRDELFYRVVPPDQSFTEK-- 235
LYRyYaGifhfrfwqyGkWvdVvvDDlLPtkdgkVpiLlfvhsaernEFW
YaGifhf+fw+yG+WvdVv+DD+LPt +g L +++s ++EFW
Y47H10A.1 236 ----YAGIFHFQFWRYGEWVDVVIDDRLPTVNGT---LCYMSSPGGSEFW 278
SALLEKAYAKlnGcYEaLYNAiLqisGGsttEAl....edlTGgvcesye
+LLEKAYAKl G YE+L t+ Al + ++ +TGg + +++
Y47H10A.1 279 GPLLEKAYAKLLGTYEHL-------NDPYTEQALwqasASFTGGLTQWFD 321
LkkapspmpSetdLnLlniikkalergsnslLrDsDLvrflllgcs.idi
+ a l +i + ++ gs l+ c +id+
Y47H10A.1 322 IFMADE-------MAVLAMIMRGVQMGS-------------LIVCLnIDV 351
tspvdmEakmakGLvkgHAYSVTgvkevnyrGekqkLiRlRNPWGdevEW
+ + ++ +GL+kg Y +Tgv + ek++LiR+R PWG v W
Y47H10A.1 352 N---EKGVRQKNGLIKGYGYCITGVNLMETEWEKAPLIRIRSPWG-KVKW 397
tGdWsDsspdWreidedekarlqlkfeeDGeFWmSfeDFlnhFsrlEICn
+Gd + s W d++ ++ + k e DGeFWmS+ DF+ +F+ + Cn
Y47H10A.1 398 KGDFCYRSHRWFGLDKEKRESFRIK-E-DGEFWMSLKDFMVEFTDVYCCN 445
Lt<-*
L+
Y47H10A.1 446 LS 447
Calpain_III: domain 1 of 1, from 469 to 617: score 91.0, E = 8.6e-26
*->kWelaiveGeW..tRgedpsdstAGGCrNypdTFwtNPQYiitLeep
W a++eGeW+++ g tAGGC + dTF+tN QY i+
Y47H10A.1 469 QWIQASFEGEWssRIG------TAGGCDDH-DTFCTNLQYEIHFRAT 508
DeddddedsevgCSvLvaLmQKdrRreRrmGedmltIGFavYeVpdelng
D d + C+ + aL QK+r +G ++ IG vYe p g
Y47H10A.1 509 DSY--DSNHK--CTIIAALFQKNRDHCVYKGLELFLIGLLVYEMP----G 550
qtnvhlsrdffltnqsrarSstFINlREVslRfrLPpGeYvvVPSTFEPn
+n + ++a S+ F ++RE Rf +P G+Yv+VPST++P
Y47H10A.1 551 -PNEKVTPEMVKSQTPIADSKLFKDSREANIRFTVPLGHYVIVPSTYDPD 599
eegeFiLRVFSEkkante<-*
++geF+LR+F+++ +
Y47H10A.1 600 QDGEFLLRIFTNVDFDKT 617