Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y47G6A.10
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Query:  Y47G6A.10  CE24356   ATPase status:Partially_confirmed TR:Q9N3T5 protein_id:AAF60660.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Peptidase_M41 Peptidase family M41                      351.6   2.2e-102   2
AAA           ATPase family associated with various c   303.2    1.9e-90   1
IstB          IstB-like ATP binding protein               7.0       0.58   1
RNA_helicase  RNA helicase                                5.4        1.8   1
bZIP          bZIP transcription factor                   4.9          7   1
ABC_tran      ABC transporter                             3.8        6.2   1
Parvo_NS1     Parvovirus non-structural protein NS1       2.0        8.6   1
Tuberin       Tuberin                                     1.3        3.3   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
RNA_helicase    1/1     330   343 ..   127   140 ..     5.4      1.8
IstB            1/1     330   345 ..    53    68 ..     7.0     0.58
Parvo_NS1       1/1     333   347 ..   176   194 ..     2.0      8.6
ABC_tran        1/1     331   349 ..     6    24 ..     3.8      6.2
AAA             1/1     328   519 ..     1   216 []   303.2  1.9e-90
Tuberin         1/1     561   576 ..   766   781 .]     1.3      3.3
Peptidase_M41   1/2     525   685 ..     1   173 [.   323.5  4.1e-94
Peptidase_M41   2/2     756   799 ..   174   217 .]    23.2    1e-05
bZIP            1/1     823   847 ..    41    65 .]     4.9        7

Alignments of top-scoring domains:
RNA_helicase: domain 1 of 1, from 330 to 343: score 5.4, E = 1.8
                   *->ylhGaPGqGKSlla<-*
                      +l+G+PG+GK+lla
   Y47G6A.10   330    ILTGPPGTGKTLLA    343

IstB: domain 1 of 1, from 330 to 345: score 7.0, E = 0.58
                   *->vLlGPpGvGKTHLAcA<-*
                      +L+GPpG+GKT LA A
   Y47G6A.10   330    ILTGPPGTGKTLLAKA    345

Parvo_NS1: domain 1 of 1, from 333 to 347: score 2.0, E = 8.6
                   *->GpastGKtnlysGAAqaIa<-*
                      Gp++tGKt l    A+a a
   Y47G6A.10   333    GPPGTGKTLL----AKATA    347

ABC_tran: domain 1 of 1, from 331 to 349: score 3.8, E = 6.2
                   *->lvGpNGaGKSTLLklisGl<-*
                      l+Gp G GK+ L+k+ +G+
   Y47G6A.10   331    LTGPPGTGKTLLAKATAGE    349

AAA: domain 1 of 1, from 328 to 519: score 303.2, E = 1.9e-90
                   *->gvLLyGPPGtGKTlLAkavAkelgvpfisisgselvskyvGesekrv
                      g +L GPPGtGKTlLAka A+e++vpfi +sgse+++++vG++ +rv
   Y47G6A.10   328    GAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARV 374

                   ralfelArkslkkaaPspiiFIDEiDalapkRgd.....egdvssrvvnq
                   r++f++Ark+    +P+ i+FIDEiDa+++kRg++++ +++ + + ++nq
   Y47G6A.10   375 RDMFSMARKN----SPC-ILFIDEIDAVGRKRGGkggmgGHSEQENTLNQ 419

                   LltemDLerigfekhylrgsdvvDlsnviviaaTNrpdlldpaLlrpGRf
                   Ll+emD    gf+++          s viviaaTNr+d+ld+aLlrpGRf
   Y47G6A.10   420 LLVEMD----GFTTD---------ESSVIVIAATNRVDILDSALLRPGRF 456

                   dreievplPdeeerleIlkihlkkmplalcqerselakdvdldelakelA
                   dr+i+vp+Pd+++r  I+++hl +++ +l+       k v  ++    lA
   Y47G6A.10   457 DRQIYVPVPDIKGRASIFRVHLGPLRTSLD-------KTVLSRK----LA 495

                   rrtpgfsgadlaalcreAalralr<-*
                   ++tpgfsgad+ ++c+eAal+a+r
   Y47G6A.10   496 AHTPGFSGADISNVCNEAALIAAR    519

Tuberin: domain 1 of 1, from 561 to 576: score 1.3, E = 3.3
                   *->AHHVIAmWFirCrLpf<-*
                      A H IA+WF++   p+
   Y47G6A.10   561    AGHAIAGWFLQHADPL    576

Peptidase_M41: domain 1 of 2, from 525 to 685: score 323.5, E = 4.1e-94
                   *->VtmaeleeAiDRviaGpEkKssrvisekeKrlvAYHEaGHALvGlll
                      ++ +++e+Ai+Rv+aG+EkK + v+ ++eK++vAYHEaGHA++G++l
   Y47G6A.10   525    ISNKHFEQAIERVVAGMEKK-TQVLQKEEKKTVAYHEAGHAIAGWFL 570

                   pgadpVhKVTIIPRGqaALGyTlflPeeDkllyLytksqLlaridvlLGG
                    +adp++KV+IIPRG   LGy+++lP e+   yLy+k qLl+r++++LGG
   Y47G6A.10   571 QHADPLLKVSIIPRGK-GLGYAQYLPKEQ---YLYSKDQLLDRMCMTLGG 616

                   RAAEEliFGddeVTTGAsnDLeqATkiARqMVTefGMSdklGpvaledsd
                   R+AEE++FG   +TTGA++DL+++T++A+++V +fGMS+k+Gp+++e
   Y47G6A.10   617 RVAEEIFFG--RITTGAQDDLQKVTQMAYSQVVKFGMSEKVGPLSFETPA 664

                   ggqvFlGrgmg.rkeySeeTadeIDeE<-*
                    g      +m+  k+ySe+Ta++ID+E
   Y47G6A.10   665 PG------EMAfDKPYSEATAQLIDQE    685

Peptidase_M41: domain 2 of 2, from 756 to 799: score 23.2, E = 1e-05
                   *->VrrlleeaYerAkeiLtenrdeLdaLAeaLLekETLdaeEirel<-*
                      Vr l+  a +r++++L e+r  ++++A  LLekE L +e++ el
   Y47G6A.10   756    VRDLVMNALRRTRDLLLEKRSDIERVALRLLEKEILNREDMIEL    799

bZIP: domain 1 of 1, from 823 to 847: score 4.9, E = 7
                   *->eNkaLrkelerLkkevakLksenee<-*
                      eN +L k le+++ke++k k++ e+
   Y47G6A.10   823    ENVELPKGLENWNKESEKKKKDEEK    847



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