Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y47D3A.10
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Query: Y47D3A.10 CE22040 status:Partially_confirmed TR:Q9NAH2 protein_id:CAB55070.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
T-box T-box 43.6 1.4e-11 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
T-box 1/2 18 69 .. 18 71 .. 32.5 2.3e-08
T-box 2/2 90 158 .. 103 191 .. 10.8 0.042
Alignments of top-scoring domains:
T-box: domain 1 of 2, from 18 to 69: score 32.5, E = 2.3e-08
*->tEMIVTKsGRRMFPtlkykVsGLdPnalYsvlldfvpvDdkRYKYnf
+EM V + G +M P k+ +sGL n Y++ l+++ +D+ RY +
Y47D3A.10 18 NEMLVKRGGVKMIPEPKFVISGLVDNEEYVIKLRIDLADEFRYS--Y 62
nngkWvv<-*
+n++W++
Y47D3A.10 63 QNQQWTP 69
T-box: domain 2 of 2, from 90 to 158: score 10.8, E = 0.042
*->etGahWMkqpVSFdklKLTNiqyKsnesledknghmIiviLnSMHKY
etGa W ++V Fdkl +T + d ++ I ++++ HKY
Y47D3A.10 90 ETGATWNMRIVQFDKLLITR-----EF--NDIQRNVI--HVEPNHKY 127
qPrlhiVevddssslspqplsertvatfsFpeTqFIAVTAYQ<-*
+P+l+i v+ +f F + +FIAV +YQ
Y47D3A.10 128 IPVLTIQNVTTG-----------KSTEFQFQQMEFIAVKSYQ 158