Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y45F10D.3
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Query: Y45F10D.3 CE16642 Glycosyl transferases status:Partially_confirmed TR:O45947 protein_id:CAA16378.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glycos_transf_2 Glycosyl transferase 105.9 8e-30 1
Ricin_B_lectin QXW lectin repeat 70.5 3.5e-17 3
ArgK ArgK protein 5.2 1.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glycos_transf_2 1/1 222 408 .. 1 149 [] 105.9 8e-30
Ricin_B_lectin 1/3 538 569 .. 1 34 [. 13.1 0.11
Ricin_B_lectin 2/3 584 625 .. 1 44 [] 26.3 3.6e-05
Ricin_B_lectin 3/3 627 667 .. 1 44 [] 31.3 1.7e-06
ArgK 1/1 661 680 .. 285 304 .] 5.2 1.5
Alignments of top-scoring domains:
Glycos_transf_2: domain 1 of 1, from 222 to 408: score 105.9, E = 8e-30
*->SiiiPtYNe.ekyleecleSllnQt.tyenfEiivVDDgS.tDgtve
S+i P++ e+ ++l++++ S++n +++ + Eii+VDD S+++ +++
Y45F10D.3 222 SVIFPFHEEhNSTLLRSVYSVINRSpPELLKEIILVDDFSeKPALRQ 268
ileeyak....dprirvirleenlGlaaArNaGlkhAtGdydyiaflDaD
le++ k+++ d+ ++v+r ++++Gl+++r G++ AtG+ +++flDa+
Y45F10D.3 269 PLEDFLKknkiDHIVKVLRTKKREGLIRGRQLGAQDATGE--ILIFLDAH 316
dev.pdwlekllellekngadivig.rv.in.e.n.kgr...........
e + +wl++ll+++ ++ +v++ ++ i+ e+++ ++ +++ +++ +
Y45F10D.3 317 SEAnYNWLPPLLDPIAEDYRTVVCPfVDvIDcEtYeVRPqdegargsfdw 366
.........lngk.l.r.l.l.v.fli.snalyrrealekll<-*
+ ++ + ++ +++ +++++ +++ +++++++ +++++l+
Y45F10D.3 367 afnykrlplTKKDrEsPtKpFnSpVMAgGYFAISAKWFWELG 408
Ricin_B_lectin: domain 1 of 3, from 538 to 569: score 13.1, E = 0.11
*->gtIrnlksglCLDvaggstadGtpvqlytChgnd<-*
g+Irn++++ C+D+ ++++++ l +C+++d
Y45F10D.3 538 GEIRNVGTNFCIDTQF--KEQNQRFGLRKCTSDD 569
Ricin_B_lectin: domain 2 of 3, from 584 to 625: score 26.3, E = 3.6e-05
*->gtIrnlksglCLDvaggstadGtpvqlytChgndgnQkWtlekd<-*
Ir+++ + C D++ d++pv+l++Ch+ gnQ+++++
Y45F10D.3 584 HDIRPKGRKICFDCST--SVDKAPVILFDCHSMKGNQLFKYRVA 625
Ricin_B_lectin: domain 3 of 3, from 627 to 667: score 31.3, E = 1.7e-06
*->gtIrnlksglCLDvaggstadGtp.vqlytChgndgnQkWtlekd<-
++I+++ sg+CL++ +G + + +C+++++ QkW + ++
Y45F10D.3 627 KQIYHPISGQCLTADE----NGKGfLHMKKCDSSSDLQKWAWQTV 667
*
Y45F10D.3 - -
ArgK: domain 1 of 1, from 661 to 680: score 5.2, E = 1.5
*->ewlwtlVedellsrvkaapa<-*
+w+w+ V +ell ++a++a
Y45F10D.3 661 KWAWQTVDNELLETRQANEA 680