Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y45F10A.6b
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Query:  Y45F10A.6b  CE18397    status:Partially_confirmed TR:Q95NR8 protein_id:CAC42378.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
TBC            TBC domain                               180.0    3.1e-51   1
GRAM           GRAM domain                              178.7    1.1e-50   2
Plasmid_stabil Plasmid stabilization system protein       6.2        3.1   1
TBSV_P22       TBSV core protein P21/P22                  3.2          5   1
DUF123         Domain of unknown function DUF123          3.1        7.6   1
PFK            Phosphofructokinase                        0.7        7.2   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Plasmid_stabil   1/1      78   100 ..    65    88 .]     6.2      3.1
TBSV_P22         1/1     146   195 ..   128   179 .]     3.2        5
GRAM             1/2     166   233 ..     1    86 []    98.6  2.6e-27
PFK              1/1     265   279 ..   298   312 .]     0.7      7.2
GRAM             2/2     321   389 ..     1    86 []    81.6  2.3e-22
DUF123           1/1     526   539 ..     1    14 [.     3.1      7.6
TBC              1/1     509   721 ..     1   341 []   180.0  3.1e-51

Alignments of top-scoring domains:
Plasmid_stabil: domain 1 of 1, from 78 to 100: score 6.2, E = 3.1
                   *->shyvvyYrlsgetgVlIlRVlHqr<-*
                      ++y++ Y +++e+ V+I  Vl  +
  Y45F10A.6b    78    PPYRIIYDFDDED-VHISIVLAVA    100

TBSV_P22: domain 1 of 1, from 146 to 195: score 3.2, E = 5
                   *->EELvsPylEGRELFsvslRWqlGLsAqsYsLPqvnvKvlYqEdalka
                      EE+vsPy E  EL svs R  l    +s+s+P+ +  v Y    l +
  Y45F10A.6b   146    EEVVSPYSE--ELDSVSTRSCLEKFHKSFSIPPDEKLVNYYKCCLWK 190

                   Lkysk<-*
                    k
  Y45F10A.6b   191 GKVPA    195

GRAM: domain 1 of 2, from 166 to 233: score 98.6, E = 2.6e-27
                   *->ekfrkhFkeilppeEkLiadckkeVtysCplqrsfreeskipvqGrl
                      ekf+k F+  +pp+EkL+++      y+C+l+++     k+p+qG l
  Y45F10A.6b   166    EKFHKSFS--IPPDEKLVNY------YKCCLWKG-----KVPAQGDL 199

                   YlTnnrlcFrSdllgdltkegviklviPladiesvekek<-*
                   +l+ n+lcF+++++g++t     k+ ++++di+++e+++
  Y45F10A.6b   200 FLSVNFLCFHAFMMGNET-----KIKLKWTDIVRLERVS    233

PFK: domain 1 of 1, from 265 to 279: score 0.7, E = 7.2
                   *->LASrmGaeAVeaLLe<-*
                      LAS+++  A ++L+e
  Y45F10A.6b   265    LASQLANIAMKQLIE    279

GRAM: domain 2 of 2, from 321 to 389: score 81.6, E = 2.3e-22
                   *->ekfrkhFkeilppeEkLiadckkeVtysCplqrsfreeskipvqGrl
                      ++fr++F+  lp +EkL++d      + C l++++   ++++v+G+l
  Y45F10A.6b   321    DAFRCQFN--LPLTEKLDGD------TQCRLFTPY---DRRHVPGKL 356

                   YlTnnrlcFrSdllgdltkegviklviPladiesvekek<-*
                   +++ n++cF+S ++  l+     ++v+Pl +++s+e ++
  Y45F10A.6b   357 FVSANFVCFAS-RTERLV-----SIVVPLIEVTSIEECS    389

DUF123: domain 1 of 1, from 526 to 539: score 3.1, E = 7.6
                   *->kgklgeveFkrGYY<-*
                       g++ e+++ +GYY
  Y45F10A.6b   526    SGAAAEMALNPGYY    539

TBC: domain 1 of 1, from 509 to 721: score 180.0, E = 3.1e-51
                   *->vrqgvpsslRgkVWklllgaqelnnclltdnfkgldlfglvpvllla
                       ++gvp  lRg++W +++ga  +                     +
  Y45F10A.6b   509    LLEGVPLQLRGQIWMVCSGAAAE---------------------MAL 534

                   dkdeYeellnknkektvqdqneKssvgirrldyVEAVEKHPLSDDNDKTK
                   ++++Y+ell kn ++++ +
  Y45F10A.6b   535 NPGYYRELLHKNQGVYSVA------------------------------- 553

                   GSLekgsdekalklredldkIekDlsRTfpdeiffqtrlaeqqlkkdqdl
                                    l++Ie+Dl+R++p+ ++fq
  Y45F10A.6b   554 -----------------LEEIERDLHRSLPEHPAFQ-------------- 572

                   daydkDEfddeddkneppsikqLrrlLvaYswknpqehlgYvQGMnvils
                                   +p+i++Lrr+L+aY+  np+  +gY+Q+Mn+++s
  Y45F10A.6b   573 ---------------QGPGIDALRRILTAYAFRNPN--IGYCQAMNIVGS 605

                   pLLlflkhgvdldeideeqAFwclvkLmdnylpqkyflndlsglnedlrv
                   +LLlf           ee AFw+lv+ +++ lp+ y++    g+  d++v
  Y45F10A.6b   606 VLLLFT---------KEEEAFWLLVAVCERLLPD-YYNTKVVGALVDQGV 645

                   LdslvkeslPeLyshlkkkenktgsgkKknllaldltllifafpwfLtlF
                   +++lv+ +lP +   l +                +l+ + +a++wfLt+F
  Y45F10A.6b   646 FSELVERLLPTVGAQLTRL---------------GLD-DMVALSWFLTVF 679

                   arelPleivlrIwDilftyYlgshflifvalAiLkllkskllkh<-*
                   +     + ++rI+D +f++  g ++ ++val  Lk ++  + ++
  Y45F10A.6b   680 LSAIKFDAAVRILDLFFFE--GARLMFQVALEMLKENEKLICES    721



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