Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y43F8C.12
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Query: Y43F8C.12 CE32017 locus:mrp-7 ABC transporter status:Partially_confirmed TR:Q9U2G5 protein_id:CAA21622.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 272.2 7e-78 2
ABC_membrane ABC transporter transmembrane region 109.6 6.1e-29 1
AIG1 AIG1 family 6.6 1.1 1
PRK Phosphoribulokinase / Uridine kinase 5.8 1.3 2
FtsK_SpoIIIE FtsK/SpoIIIE family 5.4 3.1 1
dynamin Dynamin family 5.2 5.4 1
Ubie_methyltran ubiE/COQ5 methyltransferase family 4.9 3.8 1
ATP-bind Conserved hypothetical ATP binding pr 4.4 2.9 1
PetN PetN 3.7 4.9 1
NADHdh NADH dehydrogenase 2.8 8.4 1
SMC_N RecF/RecN/SMC N terminal domain 2.6 9.4 1
DUF642 Protein of unknown function, DUF642 2.4 6.4 1
A4_EXTRA Amyloid A4 extracellular domain -0.6 3.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NADHdh 1/1 166 181 .. 316 331 .] 2.8 8.4
PetN 1/1 167 185 .. 1 19 [. 3.7 4.9
Ubie_methyltran 1/1 473 487 .. 1 15 [. 4.9 3.8
A4_EXTRA 1/1 550 562 .. 1 13 [. -0.6 3.1
ABC_membrane 1/1 304 575 .. 1 285 [] 109.6 6.1e-29
PRK 1/2 654 672 .. 1 19 [. 3.2 6.7
ATP-bind 1/1 654 672 .. 1 19 [. 4.4 2.9
dynamin 1/1 655 674 .. 28 47 .. 5.2 5.4
SMC_N 1/1 653 683 .. 26 62 .. 2.6 9.4
ABC_tran 1/2 652 789 .. 1 164 [. 103.0 1.1e-28
AIG1 1/1 904 918 .. 1 15 [. 6.6 1.1
FtsK_SpoIIIE 1/1 896 923 .. 32 65 .. 5.4 3.1
PRK 2/2 906 923 .. 1 19 [. 5.2 1.8
DUF642 1/1 935 945 .. 331 341 .] 2.4 6.4
ABC_tran 2/2 903 1086 .. 1 199 [] 173.0 6.2e-49
Alignments of top-scoring domains:
NADHdh: domain 1 of 1, from 166 to 181: score 2.8, E = 8.4
*->PlsLalllltasllit<-*
+ls+a+l+++ +l+++
Y43F8C.12 166 FLSIAYLSWYSALILY 181
PetN: domain 1 of 1, from 167 to 185: score 3.7, E = 4.9
*->mdivslgWaalmvvFtfSL<-*
+i l W + ++++tfSL
Y43F8C.12 167 LSIAYLSWYSALILYTFSL 185
Ubie_methyltran: domain 1 of 1, from 473 to 487: score 4.9, E = 3.8
*->mtvlkeekeklVhhV<-*
+++lk+e+ k+V +V
Y43F8C.12 473 QMKLKDERTKMVNEV 487
A4_EXTRA: domain 1 of 1, from 550 to 562: score -0.6, E = 3.1
*->gaaeakaePQiAm<-*
++++ + PQiA+
Y43F8C.12 550 SNPSHLLTPQIAF 562
ABC_membrane: domain 1 of 1, from 304 to 575: score 109.6, E = 6.1e-29
*->lliailllilagatalvtfplllgrlldsgfplsdgnddharsslis
+l+a l+++++ + ++ p+ll ll++ +s++n + + +
Y43F8C.12 304 FLLASTLKFVSDTMQFA-SPFLLHELLNF---ISAKNAP--FWKGMA 344
lailslfavfvliglllqgsfyllagerlgqrlrkrlfrallrqilglfd
l+il +f v l++l l+g+fy+ ++r+g+++ + l +a++++ l +
Y43F8C.12 345 LSIL-MFSVSELRSLILNGYFYI--MFRMGTKIQTSLTAAVYKKTLLISN 391
sffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivmfyy
s++ ++vGe++++++ Dve+ + +++ +++ + ++ ++++ + ++
Y43F8C.12 392 SARRDRTVGEIVNLMAIDVERFQMITPQIQQFWSCPYQITFALVYLFITL 441
swkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEslsg
+ +++ +++ i++++++++ + +++ rk +++++k ++++++++E+l+g
Y43F8C.12 442 GYSALPGVV-IMVIFVPMNIISSMIVRKWQIEQMKLKDERTKMVNEVLNG 490
irTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisylsy
i++Vk +++E +++ +d++++ +e+a ikk + ++ + + +s++ +
Y43F8C.12 491 IKVVKLYAWEVPMEAYIDEIRT-KELALIKKSAMVRNILDSFNTASPF-L 538
alalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
++ + fG++ +s+ s+ l++++ f++l l+nql+ p+
Y43F8C.12 539 VALFSFGTFV-LSNPSHLLTPQIAFVSLALFNQLRSPM 575
PRK: domain 1 of 2, from 654 to 672: score 3.2, E = 6.7
*->vIGvaGsSGaGKTtvarri<-*
+I+v G G+GK++ +++
Y43F8C.12 654 LIAVVGKVGSGKSSLLQAL 672
ATP-bind: domain 1 of 1, from 654 to 672: score 4.4, E = 2.9
*->ailViGpAGSGKSTfcgal<-*
i V+G GSGKS++ +al
Y43F8C.12 654 LIAVVGKVGSGKSSLLQAL 672
dynamin: domain 1 of 1, from 655 to 674: score 5.2, E = 5.4
*->IAVvGgQSaGKSSVLEnlvG<-*
IAVvG +GKSS L +l G
Y43F8C.12 655 IAVVGKVGSGKSSLLQALLG 674
SMC_N: domain 1 of 1, from 653 to 683: score 2.6, E = 9.4
*->gFtaIvGPNGSGKSNilDAIlFVLGegrsakkLRaer<-*
++ a+vG GSGKS++l A+ LGe + kLR+++
Y43F8C.12 653 SLIAVVGKVGSGKSSLLQAL---LGE---MGKLRGRI 683
ABC_tran: domain 1 of 2, from 652 to 789: score 103.0, E = 1.1e-28
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
+ ++a+vG G+GKS+LL +++G+ G+i ++G r
Y43F8C.12 652 NSLIAVVGKVGSGKSSLLQALLGEMGKLRGRIGVNG-R--------- 688
erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
+++v+Q+p + ++t+r+ni fg++ ++++++ +l
Y43F8C.12 689 ---------VAYVPQQPWIQ---NMTLRDNITFGRPF----DRKRYDQVL 722
kkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklLlL
+ + + ++ l+ g+ + +++++ +LSGGqk Rv++ARa++++ +++lL
Y43F8C.12 723 YACALKADIKILPAGDQTEIGEKGINLSGGQKARVSLARAVYQNLDVYLL 772
DEPTagLDpasraqlle<-*
D P ++ D++ ++++e
Y43F8C.12 773 DDPLSAVDAHVGRHIFE 789
[output cut off at A = 10 top alignments]