Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y42A5A.1
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Query: Y42A5A.1 CE20255 Zinc-binding metalloprotease domain status:Partially_confirmed TR:Q9U2H2 protein_id:CAB63366.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M1 Peptidase family M1 352.4 1.1e-121 1
FCH Fes/CIP4 homology domain 6.3 2.4 1
YABBY YABBY protein 5.0 0.69 1
Baculo_P33 Baculovirus P33 4.1 3.9 1
GASA Gibberellin regulated protein 1.9 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GASA 1/1 82 100 .. 1 20 [. 1.9 1.8
FCH 1/1 471 488 .. 1 18 [. 6.3 2.4
Peptidase_M1 1/1 153 549 .. 1 436 [] 352.4 1.1e-121
YABBY 1/1 620 629 .. 173 182 .] 5.0 0.69
Baculo_P33 1/1 783 792 .. 251 260 .] 4.1 3.9
Alignments of top-scoring domains:
GASA: domain 1 of 1, from 82 to 100: score 1.9, E = 1.8
*->vkrsvlillLLivLLtlqel<-*
+++ +li ++ iv Lt+++l
Y42A5A.1 82 MSF-ALIYFFMIVPLTSSIL 100
FCH: domain 1 of 1, from 471 to 488: score 6.3, E = 2.4
*->dgFwselnsddgykaLlk<-*
+++w++l++ +g++ L +
Y42A5A.1 471 MKWWNDLWLNEGFATLIS 488
Peptidase_M1: domain 1 of 1, from 153 to 549: score 352.4, E = 1.1e-121
*->LPttvkPlhYdLtlkpkfgnlpekpn......nftFsGsvtItltnq
P+ Pl Y+++lk+ ++p +p+ + +++nf+++G+v +++ +
Y42A5A.1 153 IPQIHIPLLYEVELKL---FVPWRPTisfgsdNFSVKGHVRVHF--T 194
atkaatdeIvLhakdltisstgegvrvtlvlvngsqklpesvefslqset
+ + I Lh+++ + + +vr++l+++ + +++ + ++s++
Y42A5A.1 195 SG-GG-SRILLHSDSKQHIG-DCVVRDELNRNIT-----VKLVGRQYSQI 236
dflavddnkekltinlpealsagqggpytLkIeyegklndismlGfYrse
l +nl+ g + ytL++ + + +n + ++G++
Y42A5A.1 237 -----------LDLNLETDMIHGMN--YTLDVAFKSAINLNLAYGLFAAP 273
YtdgkdgetkymatTQfeeptdARraFPCfDEPafKATFtitiihpkgtt
Yt +et+y+++TQ + AR +FPC+D P++KA F++ iihp+gtt
Y42A5A.1 274 YTF--ENETRYVVATQLQ-ISEARTVFPCIDVPDMKAQFDTVIIHPTGTT 320
alSNmpvisttkdddgptrvittFetTpkMStYLlAfiVGeleyietetk
++Nm + st++d++ +++ttF++Tp+MStYL+Af V+++ y+et ++
Y42A5A.1 321 SIANMMENSTKVDGE---WTTTTFHRTPPMSTYLFAFSVSDYPYLETFSG 367
dgysarevpvrvyarpgaknagqgqyalevtkkllefyedyfgipYplpK
g v++rvy++ + ++ ++q +++l+fyedyfgipYpl K
Y42A5A.1 368 RG-----VRSRVYCD--PTKLVDAQLITKSIGPVLDFYEDYFGIPYPLEK 410
lDqvAvPdFsaGAMENWGLiTyrepaLLydprsssnsdkqrVaeviaHEL
lD+v vP s AMENWGLiT r ++ Ly ++ ++s+k V+e++aHEL
Y42A5A.1 411 LDVVIVPALSVTAMENWGLITIRQTNGLYTEGRFAISQKHDVQEIVAHEL 460
AHQWFGNLVTmkWWddLWLNEGFAtymEylgtdelg.gepewnieaqfvl
AHQWFGNLVTmkWW+dLWLNEGFAt +++++d l++ ++ ++ + +
Y42A5A.1 461 AHQWFGNLVTMKWWNDLWLNEGFATLISVRAVDFLEnTTWRYEDSSAESQ 510
rddvaqlalasDslgsshPitnklvevntpaeiseiFdsaitYaKG<-*
al +D +s P++ + ++ + + ei ai Y+K+
Y42A5A.1 511 -----CVALRADQIDSISPVS--GKKNSNFDSYMEIQGKAIIYKKS 549
YABBY: domain 1 of 1, from 620 to 629: score 5.0, E = 0.69
*->AHFPhiHFgL<-*
AHFP iH ++
Y42A5A.1 620 AHFPVIHVNR 629
Baculo_P33: domain 1 of 1, from 783 to 792: score 4.1, E = 3.9
*->WstYKklLeL<-*
Ws+YKk LeL
Y42A5A.1 783 WSIYKKYLEL 792