Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y41E3.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y41E3.1 CE18369 status:Partially_confirmed TR:O62436 protein_id:CAB09003.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF229 Protein of unknown function (DUF229) 779.3 1.5e-230 1
DUF559 Protein of unknown function (DUF559) 8.3 0.99 1
DAG_PE-bind Phorbol esters/diacylglycerol binding 7.4 3.3 1
ATP-gua_PtransN ATP:guanido phosphotransferase, N-ter 4.0 9 1
wzz Chain length determinant protein 3.4 6 1
NAPRTase Nicotinate phosphoribosyltransferase 2.3 5.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF559 1/1 194 213 .. 1 20 [. 8.3 0.99
NAPRTase 1/1 317 343 .. 485 513 .] 2.3 5.5
ATP-gua_PtransN 1/1 396 407 .. 1 12 [. 4.0 9
wzz 1/1 543 560 .. 220 237 .] 3.4 6
DUF229 1/1 75 581 .. 1 561 [] 779.3 1.5e-230
DAG_PE-bind 1/1 695 709 .. 1 16 [. 7.4 3.3
Alignments of top-scoring domains:
DUF559: domain 1 of 1, from 194 to 213: score 8.3, E = 0.99
*->kkltqnArrLRrdqTdaErk<-*
+ + +Ar++R +q d E+k
Y41E3.1 194 PEIHERARKMRKEQADPEKK 213
NAPRTase: domain 1 of 1, from 317 to 343: score 2.3, E = 5.5
*->gqfvtevegcgDpddffldlLktvFelge<-*
g f+ + +g+++++ ++++ +t Fe e
Y41E3.1 317 GTFTYRLKGFRQQP--TDHYTRTLFEEVE 343
ATP-gua_PtransN: domain 1 of 1, from 396 to 407: score 4.0, E = 9
*->eypDlskHnnll<-*
e++Dls+H +++
Y41E3.1 396 EDEDLSAHLSHM 407
wzz: domain 1 of 1, from 543 to 560: score 3.4, E = 6
*->tgedpeeaariansiaev<-*
tged++++ rian+++++
Y41E3.1 543 TGEDRKLTRRIANAVVRE 560
DUF229: domain 1 of 1, from 75 to 581: score 779.3, E = 1.5e-230
*->sifkpnpylkCsketllttktfnitfgylrlnidaelalarlnvesl
++ + +++kC+ +l+++ ++ i+f+++++ +++++++++++++++
Y41E3.1 75 HAETALQSQKCNIPKLEINGSEVINFFKTHAPLECQKKNSIEDNWVF 121
enleCyykreikRkrdsaniygysklfklppkltqsvkvpvgiiegevef
n e +++++ kR++ +++i+++s+++++++k++++v+v +g++++++++
Y41E3.1 122 INDEAIIRFTEKRAKAKCKIQYFSRVDDNNNKYEEPVEVLDGDRMNGSDY 171
irteCwsdfgkiyrk.flqkDvfeflhdeerlriipksgdkrvktekstp
++C ++f+k++++ ++++D e++++ +r+++k e+ +p
Y41E3.1 172 ATISCIQGFQKWKSIlWDVNDEPEIHER---ARKMRK--------EQADP 210
kesdkpSVlilGlDSlSrmnfrRsMPrTvkflesnlgwvefqGYNKVGDN
e+++++V++lG+DSlS+m frR++P+Tvkfle+ lg+v+++GYN+VGD+
Y41E3.1 211 -EKKPYNVYFLGFDSLSQMSFRRKLPQTVKFLEETLGSVVLNGYNIVGDG 259
TfpNLlplLtGkllEavkklidsegeaeancdlppskegclDkcpfIWKd
T+++++p+Lt + +++e ++++++ ++++++ D +pfIWK+
Y41E3.1 260 TPQAFIPILTAQ--------TETELPLTRKRY--KNANYVDDVYPFIWKN 299
FkdaYGYaTafAEDwstagigtFnYlpdefkpGFkkqPtDhYlRPlllav
++d+ GY+T++AED+ ++igtF+Y+ ++GF++qPtDhY R+l+ +v
Y41E3.1 300 YSDK-GYVTMYAEDA--FSIGTFTYR----LKGFRQQPTDHYTRTLFEEV 342
EkqlkyrtrsglnlmyClgrrplhevllDylrqFlpryrdspdipfFgFf
Ek +++ n C+g+ plh+++l+++rqF+++y+d p +F ++
Y41E3.1 343 EKLNDR------N---CIGSIPLHRMWLQNGRQFMKKYEDVP---RFLLM 380
WsnslsHddfnlasalDedllkyLkkleenGlldntivifmSDHGlRfGk
+++ lsHdd+nl+++ Dedl ++L++++++Gl+d+++vi+m+DHG+Rf+k
Y41E3.1 381 HQSLLSHDDINLVGVEDEDLSAHLSHMNDEGLFDDSVVIVMADHGHRFAK 430
lrrtsqGmlEERlPfmsillPpwlRnyekyPqaveNLelNahrLtTpFDl
lr+t+qG+lEER+Pf+si+lP++lRn+ek +++ +NL+ Na +Lt+pFD+
Y41E3.1 431 LRDTHQGQLEERMPFFSISLPKQLRNTEKGRKMEQNLRENAEKLTSPFDI 480
HaTLkhilnlsslsdkellrrtkaldclpsalprgiSLFlPiPdnRtCst
Ha+L++ilnls+l ++el+r ++++ + +r+ S+F+PiP +RtCs+
Y41E3.1 481 HASLMDILNLSELGENELNR-MQDASS-----KRSLSVFKPIPVDRTCSQ 524
AgIpehwCtCesykeiptndtkekalvrriAekvvdriNellkelnteeE
AgI++hwCtC s+k+++++ +++k l+rriA++vv++iN++++ +
Y41E3.1 525 AGIEPHWCTCLSWKDAMDTGEDRK-LTRRIANAVVREINKEIVAE----- 568
lltplCapLeLqkVe<-*
++lCapL+L k++
Y41E3.1 569 --KDLCAPLSLAKII 581
DAG_PE-bind: domain 1 of 1, from 695 to 709: score 7.4, E = 3.3
*->HrFkrttfyksptfCd<-*
H+++++++ + tfC+
Y41E3.1 695 HCIIDKNY-YLATFCV 709