hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y41D4B.5
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Query:  Y41D4B.5  CE21842    status:Confirmed TR:Q95Y04 protein_id:AAK68479.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Ribosomal_S28e Ribosomal protein S28e                   142.0    1.9e-42   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Ribosomal_S28e   1/1       1    65 []     1    71 []   142.0  1.9e-42

Alignments of top-scoring domains:
Ribosomal_S28e: domain 1 of 1, from 1 to 65: score 142.0, E = 1.9e-42
                   *->mDtkvykeiklAeVikVlGRTGsrGgvtQVRvkflddkdtgRvivRN
                      mD+      +lA+V+kV+GRTGs+G++tQVRv+f++d    R+i+RN
    Y41D4B.5     1    MDK-----LTLARVTKVIGRTGSQGQCTQVRVEFIND-QNNRSIIRN 41

                   VKGPVreGDiltLlEsEREARrLr<-*
                   VKGPVreGDiltLlEsEREARrLr
    Y41D4B.5    42 VKGPVREGDILTLLESEREARRLR    65

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