Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y40H4A.1
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Query: Y40H4A.1 CE27783 locus:gar-3 muscarinic acetylcholine receptor status:Confirmed TR:Q9U7D5 protein_id:CAA22301.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
7tm_1 7 transmembrane receptor (rhodopsin family) 268.4 2.6e-86 1
Omptin Omptin family 3.0 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Omptin 1/1 1 39 [. 1 43 [. 3.0 3
7tm_1 1/1 82 551 .. 1 275 [] 268.4 2.6e-86
Alignments of top-scoring domains:
Omptin: domain 1 of 1, from 1 to 39: score 3.0, E = 3
*->MktklplqitseyedkrnektclaimliavlsiSsfaasasli<-*
M+ ++ + +d r +t l ml+ v+ S+ a+ + i
Y40H4A.1 1 MQSSS----LGNADDPRFRQTHLFQMLVKVINTSAENATKTAI 39
7tm_1: domain 1 of 1, from 82 to 551: score 268.4, E = 2.6e-86
*->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
GNl+V++ + k+l+t +n+f+++LAvAD+ +++ p+++yy +
Y40H4A.1 82 GNLMVMVSFKIDKQLQTISNYFLFSLAVADIAIGVISIPMFTYYTAI 128
gsedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrr
W +G+ +C ++ ++d++ + aS+l+L++IS+DRY ++++Pl+yr r
Y40H4A.1 129 --QKWDLGYTMCQFWLCIDYLMSNASVLNLLLISFDRYFSVTRPLSYRPR 176
rtsprrAkvvillvWvlalllslPpllfswvktveegngtlnvnvtvCli
rt ++A+ +i+++++++l+l+ P+ + sw + + + ++ +C +
Y40H4A.1 177 RT-TKKALTMIACTYIISLILWPPW-IISWPYIEGKFT----AEPGTCVV 220
dfpeestasvstwlvsyvllstlvgFllPllvilvcYtrIlrtlrkrark
f + ++++ + +F+lP+++++++Ytr++++ +kr ++
Y40H4A.1 221 QFLQTN--------PYVTVGTAVAAFYLPVTIMCILYTRVYWETQKRQKE 262
gas...............................................
+ ++ ++++ +++ ++++ +++++ ++++++++ +++ ++ +++
Y40H4A.1 263 FGKlqatqfsrrsmkrdvsstsiikssgsmrkknnqdgyvedsvtpctss 312
..................................................
+++++++ ++ +++++++++++++ + ++++ ++++ +++++++
Y40H4A.1 313 rnskrkswlrnctgksnsssedsseavamnlddtslssshfalsgsrrrn 362
..................................................
+++ ++ +++ +++++++ + + ++++ + +++++++++++++++ +
Y40H4A.1 363 isppctpmptnfedeeqtdagasmrngsarfrsrpsdtgknnnsdtytvl 412
..................................................
+ ++++++++ + ++ ++ +++ +++++++++ +++ ++++++ +++
Y40H4A.1 413 ielndegsrpsvrlsscepyldepistrnrsksdcnseiderrhsllnkq 462
........................kkrsskerkaaktllvvvvvFvlCWl
++ ++++ ++ ++++++++++++k +++e kaaktl +++++F+ W+
Y40H4A.1 463 spfkngrilknfssqerksekeqrKNERKQESKAAKTLSAILCAFIATWT 512
Pyfivllldtlc.lsiimsstCelervlptallvtlwLayvNsclNPiIY
Py++++++ ++++ v++ ++ ++++L+y+Ns++NP+ Y
Y40H4A.1 513 PYNLIVCWEAFFpNT-----------VPNVLWTFSYFLCYINSTINPLCY 551
<-*
Y40H4A.1 - -