Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y40B10A.7
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Query: Y40B10A.7 CE26082 status:Partially_confirmed TR:Q8WTM3 protein_id:AAK70662.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Methyltransf_3 O-methyltransferase 140.1 1.1e-39 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Methyltransf_3 1/2 60 102 .. 43 85 .. 33.6 9.6e-09
Methyltransf_3 2/2 118 227 .] 99 213 .] 106.7 5.7e-30
Alignments of top-scoring domains:
Methyltransf_3: domain 1 of 2, from 60 to 102: score 33.6, E = 9.6e-09
*->vkLvgAKrtLEIGVFTGYSlLatALaLPeDGkItAiDidreay<-*
+k g Kr L +G+FTG S+La ALa P+DG + + Did +y
Y40B10A.7 60 IKMFGGKRALDVGTFTGASALAWALAVPDDGEVYTFDIDHTNY 102
Methyltransf_3: domain 2 of 2, from 118 to 227: score 106.7, E = 5.7e-30
*->dKIefrvGDAlktLeqLvedkkqGeFDFiFvDADKssYlnYYErlLe
+KI +G++ +L+ L++d++ G+FDF+F+DA K+sY+ YYE++
Y40B10A.7 118 KKIKPVEGPGVESLDKLIADGQSGTFDFAFIDAEKTSYPAYYEKCVT 164
LVkvGGLiaiDNTLWfGkVaeppddevpetvreyRtvvrelNklLasDeR
L+++GG i DN L +G+Va++ e+p + + e+N+++ +D R
Y40B10A.7 165 LLRPGGVIFVDNSLRGGSVADEKRREDPNCRA-----IHEMNDKIYQDDR 209
VeislLpvgDGITLcRRi<-*
+lL +gDG + ++
Y40B10A.7 210 TYSALLNLGDGTHVAFKK 227