Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y39G10AL.3
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Query: Y39G10AL.3 CE30320 locus:cdk-7 status:Confirmed TR:Q965X0 protein_id:AAK68887.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 303.1 3.5e-87 1
IBB Importin beta binding domain 4.6 6.9 1
Ribosomal_L21e Ribosomal protein L21e 4.5 8.2 1
RIO1 RIO1 family 3.1 6.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RIO1 1/1 18 34 .. 1 26 [. 3.1 6.3
Ribosomal_L21e 1/1 95 111 .. 83 99 .] 4.5 8.2
IBB 1/1 260 283 .. 79 103 .] 4.6 6.9
pkinase 1/1 5 289 .. 1 294 [] 303.1 3.5e-87
Alignments of top-scoring domains:
RIO1: domain 1 of 1, from 18 to 34: score 3.1, E = 6.3
*->nVYhAvsyaedgekdshsvlvevAvK<-*
nVY A++ e+ge vA+K
Y39G10AL.3 18 NVYLAQD-LESGEC--------VAIK 34
Ribosomal_L21e: domain 1 of 1, from 95 to 111: score 4.5, E = 8.2
*->ileKrInvrieHirpsk<-*
i+ K I++ ++Hi+ +
Y39G10AL.3 95 IKDKEIILMPAHIKNIT 111
IBB: domain 1 of 1, from 260 to 283: score 4.6, E = 6.9
*->lelpvmvqgvnSdDpenqnlsatqa<-*
++l ++ +g+++ Dp l++tq+
Y39G10AL.3 260 QDLLDLMAGMWTFDPIKR-LTCTQS 283
pkinase: domain 1 of 1, from 5 to 289: score 303.1, E = 3.5e-87
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkk..ekesikek..
y ++++lGeG f+ Vy+a+++ ++g+ VA+K++k+++++e ++ +++
Y39G10AL.3 5 YDTIKHLGEGQFANVYLAQDL-ESGECVAIKKIKLgsREEAKDGInr 50
rflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrn
+++rEi++lk+++H+NI+ l +v + +++ lv+++m+ dL ++++++
Y39G10AL.3 51 TAIREIKLLKEIHHDNIIGLRDVIG-HRTSIQLVFDFMDT-DLEHVIKDK 98
ggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKia
+ l + ++k+i+ Q+l Gle+LH + i+HRDLKp N+L ++ g vK++
Y39G10AL.3 99 EIILMPAHIKNITMQMLLGLEFLHVHWILHRDLKPNNLLMNKM-GRVKLT 147
DFGLArlle.sssklttfvGTpwYmmAPEvileg.rgysskvDvWSlGvi
DFGLAr++ +++ ++t+ v T+wY+ APE+ l+g r y+ +D+WS+G+i
Y39G10AL.3 148 DFGLARFFGsPNRNYTHQVVTRWYR-APEL-LFGaRSYGVGIDIWSVGCI 195
LyElltggplfpgadlpaftggd.evdqli.if.vlklPfsdelpktrid
++Ell + p+fp g +++dql++if++l+ P+++ t+ +
Y39G10AL.3 196 IAELLLRNPIFP---------GEsDIDQLVkIFnILGCPTPE----TWPN 232
pleelfriikrp.glrlplpsncSee...lkdLlkkcLnkDPskRpGsat
++e+ + i +p+++ + l++++S ++++l+dL+ +++++DP kR+ t
Y39G10AL.3 233 MTEMNSYVIIKPqTEYMALNYYFSAApqdLLDLMAGMWTFDPIKRL---T 279
akeilnhpwf<-*
+++ l+ +f
Y39G10AL.3 280 CTQSLQMEYF 289