Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y39B6A.3
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Query: Y39B6A.3 CE21678 status:Partially_confirmed TR:Q9NES9 protein_id:CAC51075.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HesB-like HesB-like domain 142.4 3e-43 1
DUF297 TM1410 hypothetical-related protein 2.6 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF297 1/1 26 36 .. 236 246 .] 2.6 9.2
HesB-like 1/1 24 128 .. 1 111 [] 142.4 3e-43
Alignments of top-scoring domains:
DUF297: domain 1 of 1, from 26 to 36: score 2.6, E = 9.2
*->akmkenleRvr<-*
++++e+++R+r
Y39B6A.3 26 TLTNEAVSRIR 36
HesB-like: domain 1 of 1, from 24 to 128: score 142.4, E = 3e-43
*->mItLTdaAaahikkllssrgekngtkkgLRigVkgGGCSGlqYglgf
+tLT A+ +i+ ll+++ n+ L igV++ GC+Gl+Y+l++
Y39B6A.3 24 ALTLTNEAVSRIRVLLAQQNDANA----LKIGVRQKGCNGLTYTLEY 66
edenapeedDlvfeqdgvkvvVDpkSlpyLeGteiDyveellgsGFtFdN
+++D+++eqdg+kv + pk++ L G+e+Dyv++ l+s F F N
Y39B6A.3 67 AKD--KQKFDEEVEQDGIKVWIEPKAQLSLLGSEMDYVTDKLSSEFVFRN 114
PNAkssCGCGkSFs<-*
PN k++CGCG+SFs
Y39B6A.3 115 PNIKGTCGCGESFS 128