Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y38A10A.2
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Query: Y38A10A.2 CE21559 status:Partially_confirmed TR:Q9UAX6 protein_id:AAD14743.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF229 Protein of unknown function (DUF229) 63.4 3e-17 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF229 1/3 6 86 .. 99 196 .. 14.3 0.0024
DUF229 2/3 184 263 .. 362 443 .. 35.5 2.4e-09
DUF229 3/3 307 329 .. 488 510 .. 13.5 0.0042
Alignments of top-scoring domains:
DUF229: domain 1 of 3, from 6 to 86: score 14.3, E = 0.0024
*->rteCwsdfgkiyrkflqkDvfeflhdeerlriipksgdkrvktekst
r eC++++++iyr ++f + ++++++ + +e+ +
Y38A10A.2 6 RLECEQNGKRIYR-------KSFYNY----KKDQAE----KPVEAME 37
pkesdkpSVlilGlDSlSrmnfrRsMPrTvkflesnlgwvefqGYNKVGD
+ + + pS+ +l l S+S+++++R +P+Tvk + ++g+++f +NK+ D
Y38A10A.2 38 S-TPTSPSIAVLYLRSMSHSQLQREFPKTVKASR-KFGFYDFAMFNKISD 85
N<-*
N
Y38A10A.2 86 N 86
DUF229: domain 2 of 3, from 184 to 263: score 35.5, E = 2.4e-09
*->lDedllkyLkkleenGlldntivifmSDHGlRfGklrrtsqGmlEER
lD+ l + +++ n ++ nt+v+++S G G + ++++G++EER
Y38A10A.2 184 LDDTLSSVMNQFQLNEVFKNTLVVVVSAEGIPVGTFGNSYTGKVEER 230
lPfmsillPpwlRnyekyPqaveNLelNahrLtTp<-*
+P++ +++P++ + + y v+ Le+N++rL+T+
Y38A10A.2 231 NPILLAHIPDKVK--KLYSDHVFHLESNQNRLITH 263
DUF229: domain 3 of 3, from 307 to 329: score 13.5, E = 0.0042
*->iPdnRtCstAgIpehwCtCesyk<-*
iP nRtC++++I++++C+C+ +k
Y38A10A.2 307 IPRNRTCYHVPIADEFCLCMDRK 329