Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y37E3.15a
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Query: Y37E3.15a CE26832 status:Partially_confirmed TR:Q9BKT9 protein_id:AAK27866.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NIC Nucleoporin interacting componentent 514.0 1.1e-150 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NIC 1/1 210 478 .. 1 302 [] 514.0 1.1e-150
Alignments of top-scoring domains:
NIC: domain 1 of 1, from 210 to 478: score 514.0, E = 1.1e-150
*->vlvaltkasdaktldsrkslqtrkrkdiniVeqAkkYLEqqFreymn
v++++t+++++kt++sr++l+t++ n+Ve+A+kYL+++F+e+m+
Y37E3.15a 210 VWNDVTSVLNRKTSASRDDLTTTA----NLVEDACKYLQAVFTEHMQ 252
klvaknlqqAqlGGvPgtynlVraylnirLerqttvpglpDlesInGvPi
++v++nl++A++GG+Pgt++lV+a+l++++e++++ p+++sI+G+P+
Y37E3.15a 253 TVVERNLEVAERGGIPGTRGLVNAFLKVGTEESFQ----PEDDSIDGMPT 298
WAliYYlLRaGdlkeAvqvlneakhqfkkfaqsFptyfqlyasskdgrLp
W+++Y+++RaGd+k+A+++ln++k+ f+q+++++++l++++k+g+L+
Y37E3.15a 299 WQVTYHCVRAGDMKSASETLNRLKS----FPQCATLVAALNHVAKHGKLD 344
selenkLrlEYnqriRnAleastDGDPYKrAVYkAiiGRCDvsdtslpev
sel++kL++E++++++ +++ D+YKrA+Y+A++G++D s +++
Y37E3.15a 345 SELKKKLKVEWRHNLA----HTK--DKYKRALYAALLGGLD----S-AAL 383
adsiEDwLWlqLsliresdqesdspgErltLeelQkiiledYGesyFnks
ad++E+w+W++L+++++++q++d ++++e+Qk++++dYGe+yF+
Y37E3.15a 384 ADTLENWIWFKLYPLHVDPQLTD-----VLFKEVQKAVSVDYGEQYFM-- 426
PAenanqqpylYFqvLlLtGqFEaAIaFLyrfsenrvDAVHfAIaLaelg
+n++++++++F++L+L+GqFE+AI++L+++++ rvD+VH+A+++++lg
Y37E3.15a 427 --SNGPSEFQYFFTALWLSGQFERAIYLLHECGQ-RVDSVHVAVLAHKLG 473
LLrta<-*
+Lr++
Y37E3.15a 474 YLRMS 478