Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y37D8A.23c
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Query: Y37D8A.23c CE32012 locus:unc-25 status:Confirmed
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pyridoxal_deC Pyridoxal-dependent decarboxylase conse 480.6 1.2e-140 1
DUF310 Protein of unknown function (DUF310) 4.5 4.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pyridoxal_deC 1/1 12 357 .. 26 399 .] 480.6 1.2e-140
DUF310 1/1 406 433 .] 1 28 [. 4.5 4.5
Alignments of top-scoring domains:
pyridoxal_deC: domain 1 of 1, from 12 to 357: score 480.6, E = 1.2e-140
*->ieknimpGvthWhsPnfhayfpagnSypslLGdmLsdaINcngFtwe
+e+++ Gv+++h P+f+++ + g+++ s++G++L++++N+n+Ft+e
Y37D8A.23c 12 CEDVLRLGVRTGH-PRFFNQISCGLDLVSMAGEWLTATANTNMFTYE 57
ssPAcTELEvvvmdwlgkmlglPkeflgssgsqGGGvlqgggSESnLlal
++P+++++E vm + m+++ ++ ++ +++G++++gg+++nL+a
Y37D8A.23c 58 IAPVFILMEKSVM---ARMWEAV---GWDPE-KADGIFAPGGAIANLYAM 100
lAARtkwlrrmkargkpldeseIlgKLVlYtSdqaHsSvmeKaakiagVk
AAR+ +r k g+ + +L ++tS+++H+S+ ++a +++g++
Y37D8A.23c 101 NAARHQLWPRSKHLGMKDIP-----TLCCFTSEDSHYSI-KSASAVLGIG 144
tdnlrlipsdedngkmrgddLekaIeedkerGLiPffVcATlGTTvsgaF
d + ip+d+ ngkm++++Le++I e+k++GL+Pff c T+G+Tv+gaF
Y37D8A.23c 145 ADYCFNIPTDK-NGKMIPEALEAKIIECKKEGLTPFFACCTAGSTVYGAF 193
DnlqelgdicaklgietGydlWlHVDAAyaGsAfIcPefRhplewlfGiE
D+l++++ ic++ + lW HVDAA++G+ +++Pe+R +l GiE
Y37D8A.23c 194 DPLERVANICER------HKLWFHVDAAWGGGMLLSPEHRY---KLAGIE 234
raDSisfnPHKwmlvlldCsalwvKdksaLqdalsvnpeYLkhndkqsdv
ra+S+++nPHK+m++ll+Csa +++++++L ++++++++YL++ dk +dv
Y37D8A.23c 235 RANSVTWNPHKLMGALLQCSACLFRQDGLLFQCNQMSADYLFQQDKPYDV 284
avDfktwqIplSRgnrfriLKlWfvlRsyGveglqnhIrehvelAkyfed
+ D+++++I+++R +++ +KlW++++s+G eg++++I++ + lA yf+
Y37D8A.23c 285 SFDTGDKAIQCGR--HNDVFKLWLMWKSKGMEGYRQQINKLMDLANYFTR 332
lvrkdgrdFeivadpernlglVcFrlK<-*
++++++ +++i+ +++ ++cF+++
Y37D8A.23c 333 RIKETEGFELIIE--NPEFLNICFWYV 357
DUF310: domain 1 of 1, from 406 to 433: score 4.5, E = 4.5
*->mvksekvslkeDvkklireieeiaRsAE<-*
m++s ++ eD+ li ei i+ s E
Y37D8A.23c 406 MIISNQAITREDLDFLIKEIVDIGESLE 433