Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y22D7AR.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y22D7AR.6 CE23429 status:Partially_confirmed TR:Q9BKX8 protein_id:AAK29869.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IPK Inositol polyphosphate kinase 352.2 5.4e-102 1
Ribosomal_L36 Ribosomal protein L36 5.4 1.9 1
Metallothio_11 Metallothionein family 11 2.1 5.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L36 1/1 60 95 .. 1 37 [] 5.4 1.9
Metallothio_11 1/1 147 158 .. 45 56 .] 2.1 5.6
IPK 1/1 50 320 .. 1 388 [] 352.2 5.4e-102
Alignments of top-scoring domains:
Ribosomal_L36: domain 1 of 1, from 60 to 95: score 5.4, E = 1.9
*->mKvrasvkkiCekCklirRrgkvlv..iCsnpkHkqrqg<-*
K+ s+ ++C C i+ + +++ Csn +H+q +
Y22D7AR.6 60 -KILKSIAPLC--CSTIQGSSVSTLddSCSNCRHHQLEN 95
Metallothio_11: domain 1 of 1, from 147 to 158: score 2.1, E = 5.6
*->aCsKCaCdsCKC<-*
+ sK aC + KC
Y22D7AR.6 147 TVSKIACMTAKC 158
IPK: domain 1 of 1, from 50 to 320: score 352.2, E = 5.4e-102
*->keivklhpfveskkkaypwvqlegHkeegsfqaarrksGdsgriles
+ei++++++++ k+ p ++++ ++gs +++++++s
Y22D7AR.6 50 REILFYQKMPKILKSIAPLCCST---IQGS---------SVSTLDDS 84
inpaeasclkelmkDelrrgvprykGRtqgvlesdrklgekfllLeDLls
++++++++l++++ +++++++ ++++++rkl+++f++L+DL++
Y22D7AR.6 85 CSNCRHHQLENVV---IPESIEG------SPILNKRKLSKNFIVLSDLTY 125
gfekPCVMDlKmGtRthldealSeeKkarqlRkDMYeKMiavDpeAPTeE
++++P+++DlK+GtR+h+d+a + +K+a+
Y22D7AR.6 126 RMKSPRILDLKLGTRQHGDQA-TVSKIAC--------------------- 153
EhAqgAVTKPRYMqwKerqsTsatLGfRIcGmkvydgtses.....Nfls
M++K++++TsatLG+R+cGmk+++++++s++ +Nf++
Y22D7AR.6 154 ------------MTAKCQATTSATLGIRLCGMKIPFLEQNSqnfapNFAP 191
leeaeeaalstyfkitKyyGrslnvegvrlalkqFfssgslslralfpsc
+++a+++a+++++ i+Ky+Grs+++++++la+kqFf++++ +l++
Y22D7AR.6 192 NSAAPNFAPKSEISINKYMGRSMDKTDLFLAVKQFFDVPEAVLEE----- 236
afaaavsgglnrilrrLlelravLEsqteFFesyrfvSSSLLfvYDgeel
++rrLl++r+vL + + +++r++++SLL+v+++++
Y22D7AR.6 237 ------------VERRLLGIRDVL-CGA---DGVRLFGASLLIVIESNF- 269
RaEllnDvdlMrlidaDsdkddiddlsqndadeSsggpkdkptsgslvkV
++sq ++d +lv++
Y22D7AR.6 270 ------------------------SDSQLPID-------------NLVRI 282
kLIDFAhstflPdGqtldhdlpwekGnrDdTiGyLlGLdnLIeile<-*
k++DFA++t +G++ +++++++G rDd G +lGL++L+ei++
Y22D7AR.6 283 KVVDFANAT---FGGL--QGDSFYDG-RDD--GSILGLETLLEIVK 320