Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y22D7AR.6
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Query:  Y22D7AR.6  CE23429    status:Partially_confirmed TR:Q9BKX8 protein_id:AAK29869.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
IPK            Inositol polyphosphate kinase            352.2   5.4e-102   1
Ribosomal_L36  Ribosomal protein L36                      5.4        1.9   1
Metallothio_11 Metallothionein family 11                  2.1        5.6   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Ribosomal_L36    1/1      60    95 ..     1    37 []     5.4      1.9
Metallothio_11   1/1     147   158 ..    45    56 .]     2.1      5.6
IPK              1/1      50   320 ..     1   388 []   352.2 5.4e-102

Alignments of top-scoring domains:
Ribosomal_L36: domain 1 of 1, from 60 to 95: score 5.4, E = 1.9
                   *->mKvrasvkkiCekCklirRrgkvlv..iCsnpkHkqrqg<-*
                       K+  s+ ++C  C  i+   +  +++ Csn +H+q  +
   Y22D7AR.6    60    -KILKSIAPLC--CSTIQGSSVSTLddSCSNCRHHQLEN    95

Metallothio_11: domain 1 of 1, from 147 to 158: score 2.1, E = 5.6
                   *->aCsKCaCdsCKC<-*
                      + sK aC + KC
   Y22D7AR.6   147    TVSKIACMTAKC    158

IPK: domain 1 of 1, from 50 to 320: score 352.2, E = 5.4e-102
                   *->keivklhpfveskkkaypwvqlegHkeegsfqaarrksGdsgriles
                      +ei++++++++  k+  p ++++   ++gs         +++++++s
   Y22D7AR.6    50    REILFYQKMPKILKSIAPLCCST---IQGS---------SVSTLDDS 84

                   inpaeasclkelmkDelrrgvprykGRtqgvlesdrklgekfllLeDLls
                   ++++++++l++++   +++++++      ++++++rkl+++f++L+DL++
   Y22D7AR.6    85 CSNCRHHQLENVV---IPESIEG------SPILNKRKLSKNFIVLSDLTY 125

                   gfekPCVMDlKmGtRthldealSeeKkarqlRkDMYeKMiavDpeAPTeE
                   ++++P+++DlK+GtR+h+d+a + +K+a+
   Y22D7AR.6   126 RMKSPRILDLKLGTRQHGDQA-TVSKIAC--------------------- 153

                   EhAqgAVTKPRYMqwKerqsTsatLGfRIcGmkvydgtses.....Nfls
                               M++K++++TsatLG+R+cGmk+++++++s++  +Nf++
   Y22D7AR.6   154 ------------MTAKCQATTSATLGIRLCGMKIPFLEQNSqnfapNFAP 191

                   leeaeeaalstyfkitKyyGrslnvegvrlalkqFfssgslslralfpsc
                   +++a+++a+++++ i+Ky+Grs+++++++la+kqFf++++ +l++
   Y22D7AR.6   192 NSAAPNFAPKSEISINKYMGRSMDKTDLFLAVKQFFDVPEAVLEE----- 236

                   afaaavsgglnrilrrLlelravLEsqteFFesyrfvSSSLLfvYDgeel
                               ++rrLl++r+vL + +   +++r++++SLL+v+++++
   Y22D7AR.6   237 ------------VERRLLGIRDVL-CGA---DGVRLFGASLLIVIESNF- 269

                   RaEllnDvdlMrlidaDsdkddiddlsqndadeSsggpkdkptsgslvkV
                                           ++sq ++d             +lv++
   Y22D7AR.6   270 ------------------------SDSQLPID-------------NLVRI 282

                   kLIDFAhstflPdGqtldhdlpwekGnrDdTiGyLlGLdnLIeile<-*
                   k++DFA++t   +G++  +++++++G rDd  G +lGL++L+ei++
   Y22D7AR.6   283 KVVDFANAT---FGGL--QGDSFYDG-RDD--GSILGLETLLEIVK    320



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