Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y18H1A.1
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Query:  Y18H1A.1  CE26957    status:Partially_confirmed TR:Q9BL95 protein_id:AAK21505.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase               90.1    1.5e-24   1
Phage_Treg    Lactococcus bacteriophage putative tran     4.8        5.9   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Y_phosphatase   1/1     152   375 ..     1   274 []    90.1  1.5e-24
Phage_Treg      1/1     399   407 ..    50    58 .]     4.8      5.9

Alignments of top-scoring domains:
Y_phosphatase: domain 1 of 1, from 152 to 375: score 90.1, E = 1.5e-24
                   *->NkeKNRykdilpyDhtRVkLkegsDYINAnyidgpqsrtl.vvykkp
                      N++ N++ d+++ D++ VkL  g DY+N + +d+p   + + v+
    Y18H1A.1   152    NPKFNQSEDFPALDSNLVKL--GKDYVNISLVDVP---LGrNVHL-- 191

                   kayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqYW
                         Q+P  nT e FW+ v++ ++t I  L  ++             +
    Y18H1A.1   192 -----GQAPVTNTEETFWKAVFDKRITHIDLLVGDETIEF---------F 227

                   PeeggeeggsltyGditVtlvseekk..ddddytvRtleltn.gdeskne
                   P    + +++ +yG ++++++ +e +++d  ++ +++ ++ +++
    Y18H1A.1   228 PK---KAEDYTNYGQMWINNRRVEYVndDVYRFAIEVVPHGCsN------ 268

                   akqeklkgetrtVthyhytgWPDhgvPesg...pkslldflrkvrksqsq
                            + ++ +    +W+   vP  +    k  l +   + k+
    Y18H1A.1   269 ---------SIICNVTVISNWKVDTVPLKQaiaIKEALGLNYFLLKAPA- 308

                   enesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegv
                            d           ++++  G+GR+G f a+ ++ + +++
    Y18H1A.1   309 ---------DEH--------AMIVSPRGAGRAGYFLALAVAVNTIDTKLA 341

                   vidifdivkelRsqRpgmVQteeQYiFiydaile<-*
                    + i divk++RsqRp +V+++ QY+ +y  +l+
    Y18H1A.1   342 EPCIADIVKSIRSQRPRAVDSFCQYCSLYISLLY    375

Phage_Treg: domain 1 of 1, from 399 to 407: score 4.8, E = 5.9
                   *->YKAAVELTK<-*
                      YK  VELTK
    Y18H1A.1   399    YKKSVELTK    407



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