Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y116F11B.12a
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Query: Y116F11B.12a CE26046 UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase status:Confirmed TR:O61390
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glycos_transf_2 Glycosyl transferase 109.2 8.6e-31 1
Ricin_B_lectin QXW lectin repeat 73.3 5.1e-18 3
HpaB 4-hydroxyphenylacetate 3-hydroxylase 9.5 0.099 1
sigma70_r1_1 Sigma-70 factor, region 1.1 5.3 5.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
sigma70_r1_1 1/1 173 203 .. 56 87 .] 5.3 5.8
HpaB 1/1 178 205 .. 361 388 .] 9.5 0.099
Glycos_transf_2 1/1 154 337 .. 1 149 [] 109.2 8.6e-31
Ricin_B_lectin 1/3 463 502 .. 1 44 [] 31.5 1.5e-06
Ricin_B_lectin 2/3 504 533 .. 1 32 [. 16.7 0.012
Ricin_B_lectin 3/3 545 585 .. 1 44 [] 26.4 3.3e-05
Alignments of top-scoring domains:
sigma70_r1_1: domain 1 of 1, from 173 to 203: score 5.3, E = 5.8
*->eVvEeaPDae..elalsEeapsassDedaeeEae<-*
+V+++ P++ e++l +++ s+D + +E++
Y116F11B.1 173 SVFNQSPEELllEIVLVDDN---SQDVEIGKELA 203
HpaB: domain 1 of 1, from 178 to 205: score 9.5, E = 0.099
*->speairiallrradssgkkeyaKafaqi<-*
spe+ +++ ++d+s ++e++K++aqi
Y116F11B.1 178 SPEELLLEIVLVDDNSQDVEIGKELAQI 205
Glycos_transf_2: domain 1 of 1, from 154 to 337: score 109.2, E = 8.6e-31
*->SiiiPtYNe.ekyleecleSllnQt.tyenfEiivVDDgStDgtvei
++ii +Ne + l++++ S+ nQ++ + +Ei++VDD+S vei
Y116F11B.1 154 TVIITYHNEaRSSLLRTVFSVFNQSpEELLLEIVLVDDNS--QDVEI 198
leeyakdprirvirleenlGlaaArNaGlkhAtGdydyiaflDaDdev.p
+e+a+ ri+v+r+++++Gl++ r +G++ A+ + +++flD++ e++
Y116F11B.1 199 GKELAQIQRITVLRNNQREGLIRSRVKGAQVARAP--VLTFLDSHIECnQ 246
dwlekllellekngadivig.rv.in.e.n.kgr................
+wle+ll+++ +n++++v + ++ in +++++ + + +++ + + +
Y116F11B.1 247 KWLEPLLARIAENPKAVVAPiIDvINvDnFnYVGasadlrggfdwtlvfr 296
........lngk.l.r.l.l.v.fli.snalyrrealekll<-*
+ ++ +++++ + + +++ +++ ++ +++++e++++l+
Y116F11B.1 297 wefmneqlRKERhAhPtApIrSpTMAgGLFAISKEWFNELG 337
Ricin_B_lectin: domain 1 of 3, from 463 to 502: score 31.5, E = 1.5e-06
*->gtIrnlksglCLDvaggstadGtpvqlytChgndgnQkWtlekd<-*
++++ +lCLD ++ +++ + l+ Chg++gnQ W+++++
Y116F11B.1 463 FQMKIG--NLCLDSMA--RKESEAPGLFGCHGTGGNQEWVFDQL 502
Ricin_B_lectin: domain 2 of 3, from 504 to 533: score 16.7, E = 0.012
*->gtIrnlksglCLDvaggstadGtpvqlytChg<-*
+t++n+ s+lCLD ++ ++++ +v++ +C +
Y116F11B.1 504 KTFKNAISQLCLDFSS--NTENKTVTMVKCEN 533
Ricin_B_lectin: domain 3 of 3, from 545 to 585: score 26.4, E = 3.3e-05
*->gtIrnlksglCLDvaggstadGtpvqlytChgndgnQkWtlekd<-*
g +++ g+CL+v++gs d+ + ++C n+g+Q+W++ek+
Y116F11B.1 545 GWLTQG--GKCLTVNQGSGGDWL-IYGAHCELNNGAQRWIFEKL 585