Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y116A8C.34
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Query: Y116A8C.34 CE24152 locus:cyp-13 status:Confirmed TR:Q9U2S6 protein_id:CAB55151.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pro_isomerase Cyclophilin type peptidyl-prolyl cis-tr 340.2 2.2e-98 1
rrm RNA recognition motif. (a.k.a. RRM, RBD 91.0 2.4e-25 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
rrm 1/1 13 84 .. 1 77 [] 91.0 2.4e-25
pro_isomerase 1/1 140 300 .. 1 180 [] 340.2 2.2e-98
Alignments of top-scoring domains:
rrm: domain 1 of 1, from 13 to 84: score 91.0, E = 2.4e-25
*->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
l+Vg++++dvte+ L + F +fG++v i i+ D e gk++Gf
Y116A8C.34 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMD-----YESGKHRGF 54
aFVeFeseedAekAlealnGkelggrklrv<-*
+FVeF+ edA+ A++++n+ el g+++rv
Y116A8C.34 55 GFVEFDMAEDAAMAIDNMNESELFGKTIRV 84
pro_isomerase: domain 1 of 1, from 140 to 300: score 340.2, E = 2.2e-98
*->kvyFDitiggkplGrIvfeLfgdvvPkTaeNFraLctgekgfgkklf
+vy+ ++ig +GrIv+eL dv+PkTaeNFr+Lctge gfg
Y116A8C.34 140 RVYLGVKIGIRYIGRIVIELRTDVTPKTAENFRCLCTGERGFG---- 182
YkGstFHRVIpnFMiQGGDftagnqGtGGkSIYGekFkDEnfnlkHdrhe
Y+Gs+FHR+Ip+FM+QGGDft g+ GtGGkSIYG kF+DEnf+l H+
Y116A8C.34 183 YEGSIFHRIIPKFMLQGGDFTKGD-GTGGKSIYGTKFDDENFTLRHTM-- 229
pGtLSMANaGdpnTNGSQFFItTvktpwLDGKHVvdfGYAVFGkVveGmd
pGt+SMAN G nTNGSQFFI+T+kt+wLDGKHV VFG+VveGm
Y116A8C.34 230 PGTVSMANCG-ANTNGSQFFICTEKTDWLDGKHV------VFGHVVEGMN 272
VVkkIenvgtdeyGksgdkpskeVkIadcgqle<-*
+V+++e++gt sg kp VkI+++g++e
Y116A8C.34 273 IVRQVEQQGTP----SG-KPQMVVKIVESGEIE 300