Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y116A8C.4
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Query: Y116A8C.4 CE23315 status:Partially_confirmed TR:Q9U2T1 protein_id:CAB55146.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M13 Peptidase family M13 193.0 2e-59 1
PhoU PhoU family 5.2 4.2 1
FAD_binding_1 FAD binding domain 4.8 3.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FAD_binding_1 1/1 150 159 .. 229 238 .] 4.8 3.6
PhoU 1/1 659 685 .. 19 46 .. 5.2 4.2
Peptidase_M13 1/1 542 744 .. 1 222 [] 193.0 2e-59
Alignments of top-scoring domains:
FAD_binding_1: domain 1 of 1, from 150 to 159: score 4.8, E = 3.6
*->rirkGvaSny<-*
r+++G++S+y
Y116A8C.4 150 RKFHGICSKY 159
PhoU: domain 1 of 1, from 659 to 685: score 5.2, E = 4.2
*->laerDenelAeevieelDdeiDdlyeqi<-*
+ + D+ + A ++i ++D++iD+ly+++
Y116A8C.4 659 FKSLDL-TNATRIIGFEDYDIDQLYFRV 685
Peptidase_M13: domain 1 of 1, from 542 to 744: score 193.0, E = 2e-59
*->NAyynpefNsitfpagilvpPffdltyPravnskyGgiGfVlgHEig
NAyy N+++f+a + ++P+fd tyP++vn ++ G+++gHE+g
Y116A8C.4 542 NAYYYIPGNQLNFLAPFFDDPMFDSTYPDYVN--IAMSGNIIGHEMG 586
HgFDdqGiqldeeGsLadcwnlrdWkwtdednkcfqdrvkclidqyseav
H+F ++ i G+ W +++e++++++ r++cl++qyse++
Y116A8C.4 587 HAFGPHAILRTVRGR-------EVW-MKPEELAEYESRAQCLANQYSEYD 628
kPddkgwfnncankGattlgEniADlgGlraAlkaykkkssdeereeqrl
+Pd+ g+ G ++ +E +AD +G ++++k++k +++++ +r+
Y116A8C.4 629 DPDF-GRVFD----GGKVIDELVADNIGREVSWKMFKSLDLTNA---TRI 670
pgLenftpdQLfFetyAyswCrksrpenslrpllvdpHsPnelRvNgavr
+g+e++++dQL+F+ A+ C+ +++ + + +H+ +RvNg+++
Y116A8C.4 671 IGFEDYDIDQLYFRVGALTHCTPHAMRDLKGSIES-SHPRKAFRVNGVYA 719
nmPaFasaFnCkpGdkMfpepekrc<-*
n P+Fa+aFnC+ G++M+p ++k++
Y116A8C.4 720 NLPEFARAFNCPTGSPMNPRKKKEI 744