Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y116A8C.24
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Query: Y116A8C.24 CE23332 status:Partially_confirmed TR:Q9U2U8 protein_id:CAB55129.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 156.5 4.6e-43 1
DUF495 Protein of unknown function (DUF495) 5.6 6.4 1
SH2 SH2 domain 3.7 5.4 1
Ribosomal_L27e Ribosomal L27e protein family 3.6 2.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SH2 1/1 70 93 .. 1 28 [. 3.7 5.4
Ribosomal_L27e 1/1 337 348 .. 1 12 [. 3.6 2.5
pkinase 1/1 179 456 .. 1 294 [] 156.5 4.6e-43
DUF495 1/1 480 491 .. 77 88 .] 5.6 6.4
Alignments of top-scoring domains:
SH2: domain 1 of 1, from 70 to 93: score 3.7, E = 5.4
*->WyhGkIsRkeAErlLlnpggkdGtFLvR<-*
+yhG + R +E L G++L+R
Y116A8C.24 70 YYHGMVARDLVESKLTR----CGDYLIR 93
Ribosomal_L27e: domain 1 of 1, from 337 to 348: score 3.6, E = 2.5
*->KVTkkmGaKKiA<-*
KV + +aKK+A
Y116A8C.24 337 KVRRNESAKKVA 348
pkinase: domain 1 of 1, from 179 to 456: score 156.5, E = 4.6e-43
*->yelleklGeGsfGkVykakhkd.ktgkiVAvKilkkekesikek...
+ lG G+f+ V+++k ++ VA+K+ k+ + +++++++
Y116A8C.24 179 SPKDDLLGTGNFSDVFRGKIELeNQMVNVALKTTKLLDDTMDPTknv 225
.......rflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdL
+ ++ ++ ++ E++++ +L+H N+ ++g+ + ++ l+ E+++gG L
Y116A8C.24 226 kankikkEMIQEAEVMSQLRHANVTSFFGIAV-DRLPILLIIEFCNGGNL 274
fdylrrnggplsekeakkialQilrGleYLHsngivHRDLKpeNILlden
+l + g++++ +e + ++ Gl+Y+H ++i HRD++++N+L++ n
Y116A8C.24 275 QGHLIKFGDRIGTNERFLYLHDASAGLNYIHAMSITHRDIAARNCLISVN 324
dgtvKiaDFGLArlle............sssklttfvGTpwYmmAPEvil
g+vK++DFG+ +++++++ ++ +++++ ++ ++m +PE+ +
Y116A8C.24 325 -GFVKLSDFGMGLKVRrnesakkvaeddDGKENKEPKLPVRWM-SPEL-V 371
eg.rgysskvDvWSlGviLyElltggplfpgadlpaftggdevdqliifv
++ +s+ +D+WSlG++ yE++t
Y116A8C.24 372 DTpDAFSKMSDMWSLGILAYEIFTNA------------------------ 397
lklPfsdelpktridpleelfriikrpglrlplpsncSeelkdLlkkcLn
+ Pf + +++ +k g ++plp + ++l+ Llk+ L
Y116A8C.24 398 -TKPFFN-------LDDTDVMQTVKS-GKHPPLPLSMGPDLIRLLKDVLV 438
kDPskRpGsatakeilnhpwf<-*
P++R ta n + +
Y116A8C.24 439 AAPTQRT---TADKFYNELHV 456
DUF495: domain 1 of 1, from 480 to 491: score 5.6, E = 6.4
*->ekaakieGYvPp<-*
+++ + eGY+P+
Y116A8C.24 480 KRVEHWEGYIPQ 491