Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y113G7C.1
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Query:  Y113G7C.1  CE23304   Protein-tyrosine phosphatase status:Partially_confirmed TR:Q9XWA6 protein_id:CAA22059.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Y_phosphatase   Protein-tyrosine phosphatase            273.4      3e-78   1
WSN             Domain of unknown function               68.2    1.3e-17   1
Glycos_transf_1 Glycosyl transferases group 1             5.7        2.6   1
Paramyxo_P      Paramyxovirus P phosphoprotein            5.4       0.49   1
DUF485          Protein of unknown function, DUF485       4.3        6.8   1
Urotensin_II    Urotensin II                              4.2        8.4   1
DSPc            Dual specificity phosphatase, catalyt     4.2        6.6   1
Adeno_PIX       Adenovirus hexon-associated protein (     3.6        8.3   1
E1_N            E1 Protein, N terminal domain             3.0        7.9   1
NIF             NLI interacting factor                    3.0        9.2   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
WSN               1/1     172   240 ..     1    72 []    68.2  1.3e-17
Adeno_PIX         1/1     227   247 ..   104   124 .]     3.6      8.3
Paramyxo_P        1/1     446   456 ..   600   610 .]     5.4     0.49
NIF               1/1     549   566 ..   183   202 .]     3.0      9.2
E1_N              1/1    1019  1043 ..   134   161 .]     3.0      7.9
Glycos_transf_1   1/1    1037  1057 ..   165   191 .]     5.7      2.6
DUF485            1/1    1097  1109 ..    93   108 .]     4.3      6.8
Urotensin_II      1/1    1244  1255 ..     1    12 []     4.2      8.4
DSPc              1/1    1354  1376 ..   102   124 ..     4.2      6.6
Y_phosphatase     1/1    1194  1423 ..     1   274 []   273.4    3e-78

Alignments of top-scoring domains:
WSN: domain 1 of 1, from 172 to 240: score 68.2, E = 1.3e-17
                   *->skLqtvienlsilaRVtNAIsLqaglingsiksddvIaELLniGtin
                      ++ +++++++ ++a+V N+I+Lqagl+ngsi++ +v+ ELL    ++
   Y113G7C.1   172    TNPADFLNHITVVAHVSNGITLQAGLMNGSIPIVEVVDELLD---LG 215

                   psqlselinvdlkkiveglngLkei<-*
                   ++++ +l++++ +ki +   +Lke
   Y113G7C.1   216 SAKVADLVSFKEDKITALVSKLKEV    240

Adeno_PIX: domain 1 of 1, from 227 to 247: score 3.6, E = 8.3
                   *->eekltvllaeLerLtqqLaal<-*
                      e+k+t+l  +L++ +q++aa
   Y113G7C.1   227    EDKITALVSKLKEVRQGVAAK    247

Paramyxo_P: domain 1 of 1, from 446 to 456: score 5.4, E = 0.49
                   *->MelfeEDieSl<-*
                      Melfe D+ S+
   Y113G7C.1   446    MELFEDDVKSQ    456

NIF: domain 1 of 1, from 549 to 566: score 3.0, E = 9.2
                   *->PfLeaLrfvdikDVRsvLkr<-*
                      P+Le++ +v  k+V + L
   Y113G7C.1   549    PGLEFMTKV--KSVGDSLAA    566

E1_N: domain 1 of 1, from 1019 to 1043: score 3.0, E = 7.9
                   *->rqnkkaKRRLFeelPEvpDSGyGntevE<-*
                      +++kk+K ++F+    ++D  ++  e +
   Y113G7C.1  1019    EEEKKRKTQDFQD---QQDADIERAEAD    1043

Glycos_transf_1: domain 1 of 1, from 1037 to 1057: score 5.7, E = 2.6
                   *->iekllkdeekkdllelrkrlgenarkr<-*
                      ie++++de      ++rk+ +e+a+k+
   Y113G7C.1  1037    IERAEADE------QRRKMNVERAKKD    1057

DUF485: domain 1 of 1, from 1097 to 1109: score 4.3, E = 6.8
                   *->DrlalelvAGkeevqg<-*
                      D+la+e+   ke++++
   Y113G7C.1  1097    DKLAAEV---KEREEK    1109

Urotensin_II: domain 1 of 1, from 1244 to 1255: score 4.2, E = 8.4
                   *->gstadCFWKYCv<-*
                       +t + FW  Cv
   Y113G7C.1  1244    DNTCEDFWAMCV    1255

DSPc: domain 1 of 1, from 1354 to 1376: score 4.2, E = 6.6
                   *->arqkggkVLVHCqAGiSRSAtli<-*
                      ++++  ++ VHC AGi R+ ++i
   Y113G7C.1  1354    VKKSENPIVVHCSAGIGRTTAFI    1376

Y_phosphatase: domain 1 of 1, from 1194 to 1423: score 273.4, E = 3e-78
                   *->NkeKNRykdilpyDhtRVkLk..egsDYINAnyidgpqsrtlvvykk
                      +k+K Ry  +++ + t V + +++    I+An+i++        +++
   Y113G7C.1  1194    HKDKHRYDGVPCKPLTAVEVMdnGKRVPIHANWIPT--------HGH 1232

                   pkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqY
                   p+++IaTQgPl+nT+eDFW M+  ++v  I+ML+  vEk+   +K Ca Y
   Y113G7C.1  1233 PHRFIATQGPLDNTCEDFWAMCVYHNVDKIAMLCLNVEKNV--KK-CAVY 1279

                   WPeeggeeggsltyGditVtlvseekkddddytvRtleltn.gdesknea
                   + +       +l  G++++t++s +  + d+++ R+l ++++++
   Y113G7C.1  1280 FAS---DPPSKLDIGRFQITTQSRQLILRDNVIERKLLVKDtTG------ 1320

                   kqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqenes
                        k e++tVthy++  WPD+++P++ + + +++++ v+ks +
   Y113G7C.1  1321 -----KFEPKTVTHYQHVKWPDRDTPKT-HVDTFELMELVKKSEN----- 1359

                   geaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvidi
                                  PivVHCSAGiGRT +fi+ ++l++ +e++ ++  +
   Y113G7C.1  1360 ---------------PIVVHCSAGIGRTTAFIGTEYLAREVENDPKI-EL 1393

                   fdivkelRsqRpgmVQteeQYiFiydaile<-*
                    +++k+lR++R+  VQ+ +Q++++   + +
   Y113G7C.1  1394 TEALKHLREHRWKGVQMRSQLYWMTLGAVY    1423

	[output cut off at A = 10 top alignments]


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