Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y113G7C.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y113G7C.1 CE23304 Protein-tyrosine phosphatase status:Partially_confirmed TR:Q9XWA6 protein_id:CAA22059.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 273.4 3e-78 1
WSN Domain of unknown function 68.2 1.3e-17 1
Glycos_transf_1 Glycosyl transferases group 1 5.7 2.6 1
Paramyxo_P Paramyxovirus P phosphoprotein 5.4 0.49 1
DUF485 Protein of unknown function, DUF485 4.3 6.8 1
Urotensin_II Urotensin II 4.2 8.4 1
DSPc Dual specificity phosphatase, catalyt 4.2 6.6 1
Adeno_PIX Adenovirus hexon-associated protein ( 3.6 8.3 1
E1_N E1 Protein, N terminal domain 3.0 7.9 1
NIF NLI interacting factor 3.0 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WSN 1/1 172 240 .. 1 72 [] 68.2 1.3e-17
Adeno_PIX 1/1 227 247 .. 104 124 .] 3.6 8.3
Paramyxo_P 1/1 446 456 .. 600 610 .] 5.4 0.49
NIF 1/1 549 566 .. 183 202 .] 3.0 9.2
E1_N 1/1 1019 1043 .. 134 161 .] 3.0 7.9
Glycos_transf_1 1/1 1037 1057 .. 165 191 .] 5.7 2.6
DUF485 1/1 1097 1109 .. 93 108 .] 4.3 6.8
Urotensin_II 1/1 1244 1255 .. 1 12 [] 4.2 8.4
DSPc 1/1 1354 1376 .. 102 124 .. 4.2 6.6
Y_phosphatase 1/1 1194 1423 .. 1 274 [] 273.4 3e-78
Alignments of top-scoring domains:
WSN: domain 1 of 1, from 172 to 240: score 68.2, E = 1.3e-17
*->skLqtvienlsilaRVtNAIsLqaglingsiksddvIaELLniGtin
++ +++++++ ++a+V N+I+Lqagl+ngsi++ +v+ ELL ++
Y113G7C.1 172 TNPADFLNHITVVAHVSNGITLQAGLMNGSIPIVEVVDELLD---LG 215
psqlselinvdlkkiveglngLkei<-*
++++ +l++++ +ki + +Lke
Y113G7C.1 216 SAKVADLVSFKEDKITALVSKLKEV 240
Adeno_PIX: domain 1 of 1, from 227 to 247: score 3.6, E = 8.3
*->eekltvllaeLerLtqqLaal<-*
e+k+t+l +L++ +q++aa
Y113G7C.1 227 EDKITALVSKLKEVRQGVAAK 247
Paramyxo_P: domain 1 of 1, from 446 to 456: score 5.4, E = 0.49
*->MelfeEDieSl<-*
Melfe D+ S+
Y113G7C.1 446 MELFEDDVKSQ 456
NIF: domain 1 of 1, from 549 to 566: score 3.0, E = 9.2
*->PfLeaLrfvdikDVRsvLkr<-*
P+Le++ +v k+V + L
Y113G7C.1 549 PGLEFMTKV--KSVGDSLAA 566
E1_N: domain 1 of 1, from 1019 to 1043: score 3.0, E = 7.9
*->rqnkkaKRRLFeelPEvpDSGyGntevE<-*
+++kk+K ++F+ ++D ++ e +
Y113G7C.1 1019 EEEKKRKTQDFQD---QQDADIERAEAD 1043
Glycos_transf_1: domain 1 of 1, from 1037 to 1057: score 5.7, E = 2.6
*->iekllkdeekkdllelrkrlgenarkr<-*
ie++++de ++rk+ +e+a+k+
Y113G7C.1 1037 IERAEADE------QRRKMNVERAKKD 1057
DUF485: domain 1 of 1, from 1097 to 1109: score 4.3, E = 6.8
*->DrlalelvAGkeevqg<-*
D+la+e+ ke++++
Y113G7C.1 1097 DKLAAEV---KEREEK 1109
Urotensin_II: domain 1 of 1, from 1244 to 1255: score 4.2, E = 8.4
*->gstadCFWKYCv<-*
+t + FW Cv
Y113G7C.1 1244 DNTCEDFWAMCV 1255
DSPc: domain 1 of 1, from 1354 to 1376: score 4.2, E = 6.6
*->arqkggkVLVHCqAGiSRSAtli<-*
++++ ++ VHC AGi R+ ++i
Y113G7C.1 1354 VKKSENPIVVHCSAGIGRTTAFI 1376
Y_phosphatase: domain 1 of 1, from 1194 to 1423: score 273.4, E = 3e-78
*->NkeKNRykdilpyDhtRVkLk..egsDYINAnyidgpqsrtlvvykk
+k+K Ry +++ + t V + +++ I+An+i++ +++
Y113G7C.1 1194 HKDKHRYDGVPCKPLTAVEVMdnGKRVPIHANWIPT--------HGH 1232
pkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqY
p+++IaTQgPl+nT+eDFW M+ ++v I+ML+ vEk+ +K Ca Y
Y113G7C.1 1233 PHRFIATQGPLDNTCEDFWAMCVYHNVDKIAMLCLNVEKNV--KK-CAVY 1279
WPeeggeeggsltyGditVtlvseekkddddytvRtleltn.gdesknea
+ + +l G++++t++s + + d+++ R+l ++++++
Y113G7C.1 1280 FAS---DPPSKLDIGRFQITTQSRQLILRDNVIERKLLVKDtTG------ 1320
kqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqenes
k e++tVthy++ WPD+++P++ + + +++++ v+ks +
Y113G7C.1 1321 -----KFEPKTVTHYQHVKWPDRDTPKT-HVDTFELMELVKKSEN----- 1359
geaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvidi
PivVHCSAGiGRT +fi+ ++l++ +e++ ++ +
Y113G7C.1 1360 ---------------PIVVHCSAGIGRTTAFIGTEYLAREVENDPKI-EL 1393
fdivkelRsqRpgmVQteeQYiFiydaile<-*
+++k+lR++R+ VQ+ +Q++++ + +
Y113G7C.1 1394 TEALKHLREHRWKGVQMRSQLYWMTLGAVY 1423
[output cut off at A = 10 top alignments]