Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y110A7A.12
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Query: Y110A7A.12 CE23245 ATP synthase status:Partially_confirmed TR:Q9N5A0 protein_id:AAF60418.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ATP-synt_ab ATP synthase alpha/beta family, nucleot 275.1 9.3e-79 1
ATP-synt_ab_C ATP synthase alpha/beta chain, C termin 92.2 2.5e-25 1
ATP-synt_ab_N ATP synthase alpha/beta family, beta-ba 51.9 4.2e-16 1
Ran_BP1 RanBP1 domain 6.0 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ATP-synt_ab_N 1/1 44 110 .. 1 69 [] 51.9 4.2e-16
Ran_BP1 1/1 231 246 .. 112 127 .] 6.0 1.8
ATP-synt_ab 1/1 216 397 .. 1 187 [] 275.1 9.3e-79
ATP-synt_ab_C 1/1 404 501 .] 1 137 [. 92.2 2.5e-25
Alignments of top-scoring domains:
ATP-synt_ab_N: domain 1 of 1, from 44 to 110: score 51.9, E = 4.2e-16
*->ivqviGpVvdVefgigrlpgiynalevelvefgklvlgvvlnLgddk
+ v+Gp+v+V +++ p ++++++ l + g +++g+vl+ + +k
Y110A7A.12 44 VFGVNGPLVIVHNVKF--PMFNEIVKITLPN-GQIRMGQVLESSKNK 87
VrivvmgsTdGlkr.GdeVkdTG<-*
++++v+++T+G++ + +++++TG
Y110A7A.12 88 AVVQVFEGTTGVDAkFTTCEFTG 110
Ran_BP1: domain 1 of 1, from 231 to 246: score 6.0, E = 1.8
*->EeAdeFKkkFEeaqke<-*
E+A+ FK+ FEe+ +
Y110A7A.12 231 ETARFFKQDFEECGSM 246
ATP-synt_ab: domain 1 of 1, from 216 to 397: score 275.1, E = 9.3e-79
*->eeadvvVyvlIGeRgrEvaefveelleegalktglmrtvlVaatade
++++V++++G +++++f ++++e g ++ +++l+ + a++
Y110A7A.12 216 TVNFAIVFAAMGVNMETARFFKQDFEECGSMD----NVCLFLNLAND 258
pallRylapytattiAEYFrd.qGkdVLliiDsltRfAqAlREiSlllge
p ++R+++p++a+t AE+F+++ Gk+VL+++++++ +A+AlREiS++++e
Y110A7A.12 259 PTIERIITPRIALTAAEFFAYhCGKHVLVVLTDMSSYAEALREISAAREE 308
pPgreGYPpdvfyllsrLlERAGklsdeggkGSITalptVltegdDisdP
+Pgr+G+P++++++l++++ERAG+ ++g++GSIT++p+++++++Di++P
Y110A7A.12 309 VPGRRGFPGYMYTDLATIYERAGR--VKGREGSITQIPILTMPNNDITHP 356
ipdnvisItDGqIvLsreLaerGiyPAIdvllSvSRvgsaa<-*
ipd +++It+GqI+ +++L+ r iyP+Idvl+S+SR++++a
Y110A7A.12 357 IPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMKSA 397
ATP-synt_ab_C: domain 1 of 1, from 404 to 501: score 92.2, E = 2.5e-25
*->gkahkqVagklkleLaqyrELqafaQlvGsDeLseeDKltQQLerAr
+++h +++++l++ +a ++++qa+ ++vG ++Ls +D l+ Le+
Y110A7A.12 404 REDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPDDLLY--LEFLA 448
rieedfLkQnqyspeDvFcpvekqyvsLrnIiFYdeAqkAleGvtlnkIv
++e f+ Q+ y+++ + +
Y110A7A.12 449 KFEKNFIAQGRYENR-----------T----------------------I 465
eetidlfyallrGklddlpedalekigtidiakykalnke<-*
e++++ ++llr ++p+++l++i++ +++ky+++ k+
Y110A7A.12 466 VESLNIGWELLR----IFPREMLKRIPETLLEKYYKRKKQ 501