Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y110A7A.18
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Query: Y110A7A.18 CE23239 status:Partially_confirmed TR:Q9N585 protein_id:AAF60414.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 373.3 2.5e-108 1
PAZ PAZ domain 117.9 1.1e-32 1
THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydro 2.2 3.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
THF_DHG_CYH 1/1 312 338 .. 1 27 [. 2.2 3.9
PAZ 1/1 328 461 .. 1 161 [] 117.9 1.1e-32
Piwi 1/1 604 934 .. 1 341 [] 373.3 2.5e-108
Alignments of top-scoring domains:
THF_DHG_CYH: domain 1 of 1, from 312 to 338: score 2.2, E = 3.9
*->mgAqiidGkalAqeiraelaqeVaalk<-*
++ ++idG+++A ++++ + q+ ++
Y110A7A.18 312 NPSIVIDGMKVAFHMEQLVFQKLSSIT 338
PAZ: domain 1 of 1, from 328 to 461: score 117.9, E = 1.1e-32
*->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
+ v ++l ++++ + +++ ++r++++ ++kGl++ ++r+
Y110A7A.18 328 QLVFQKLSSITSNLA-NGITGSERERCAAVIKGLDCHSNYRG----- 368
eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
+ r++ki++++++ a + +F+l++ g ++tva YFk+kY+i+L+
Y110A7A.18 369 -RTRHHKIESIHHEGAATARFELEG------GGTCTVATYFKDKYKIQLR 411
ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
yp+ +l+v++ r+ n++P+EL i+p+Qr+ + +
Y110A7A.18 412 YPNANLIVCKERGAL--------------NFYPMELITISPNQRVRITQQ 447
erqtsalikkraqr<-*
+ +s+ ++k++++
Y110A7A.18 448 TSSQSQRTTKESAV 461
Piwi: domain 1 of 1, from 604 to 934: score 373.3, E = 2.5e-108
*->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
++v+ +++dn++ l ++++K++e +++ Q+++l+++ ++++
Y110A7A.18 604 TFVLCITEDNITCL----HQKYKFIEHHT-QMIVQDMKLSKALSVVN 645
qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
+ ++ltl+Nvi+k+n+KlGG Ny+ + k+ l+ +lii
Y110A7A.18 646 ASKKLTLENVINKTNVKLGGSNYVYLDTKNF------------LQEHLII 683
GfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvrlqpa
G+++s pp +Tk+ +e+ g ln p+++g++++ + ++f gd++l a
Y110A7A.18 684 GVGISSPPPGTKYIMESRGILN-PTIVGFAYNGN--GKQEFSGDFVLNAA 730
gqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsqvlny
gqE+++++++ i+ +s+++++k +++k PkrI +YR+G SEG++ ++ y
Y110A7A.18 731 GQETIAPIED-IVSYSIKGYKKFHDGKAPKRITIYRSGSSEGNHGPIISY 779
EvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggs....
Ev++++ a++ +s++ q l++Ivv+K H +RfF++++++ +s++++
Y110A7A.18 780 EVPLARVAMRNFSPDTQ-----LLYIVVSKEHTYRFFKKESGGSSSggsn 824
...............kakaqNvpPGTvVDdkitspeyydFylcsqagrqG
+ + +++++ ++ ++k ++ N+ PG +VD +t+p++++F+l+s+ ++qG
Y110A7A.18 825 sagasnsgtltsappKPWELNIGPGLTVDYGVTNPACKQFFLNSHMTLQG 874
TvkPthYtVlyDdigeyylsadelqdLTykLCymyqrvtrpvslPaPvyY
+k++ YtVl+Dd + ++ l++ T++LC+++q+v+ p+s+P+P+y+
Y110A7A.18 875 SAKTPLYTVLADDRN---IGMSALEEFTFNLCHLHQIVGLPTSIPTPLYV 921
AhllAkrgrnnlk<-*
A+++Akrgrn+++
Y110A7A.18 922 ANEYAKRGRNLWN 934