Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y110A2AL.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y110A2AL.3  CE25191    status:Partially_confirmed TR:Q9N498 protein_id:AAF60402.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
CC       CC domain                                       61.2      2e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CC         1/2      26    61 ..     1    36 []    60.0  4.5e-16
CC         2/2      78   105 ..     9    36 .]     5.3      7.2

Alignments of top-scoring domains:
CC: domain 1 of 2, from 26 to 61: score 60.0, E = 4.5e-16
                   *->ssssalsCKsptgPaifGvCpaGqVlvvgdrCCaak<-*
                        +++l+CK+p++Paif++Cp G+Vlv +d+CC++k
  Y110A2AL.3    26    GIEAYLDCKGPMSPAIFRACPVGEVLVLEDNCCDSK    61

CC: domain 2 of 2, from 78 to 105: score 5.3, E = 7.2
                   *->KsptgPaifGvCpaGqVlvvgdrCCaak<-*
                      K++  Pai+  Cp G  ++ g+ CC ++
  Y110A2AL.3    78    KGAWAPAINNMCPTGSRVTKGYWCCYTE    105



[DB home][top]