Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y110A2AL.14
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Query: Y110A2AL.14 CE25190 status:Partially_confirmed TR:Q9N491 protein_id:AAF60408.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Galactosyl_T Galactosyltransferase 46.4 5.3e-12 2
PSI Plexin repeat 5.0 2.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PSI 1/1 15 31 .. 9 26 .. 5.0 2.9
Galactosyl_T 1/2 72 158 .. 1 93 [. 14.0 0.008
Galactosyl_T 2/2 205 259 .. 150 209 .] 32.3 5.3e-08
Alignments of top-scoring domains:
PSI: domain 1 of 1, from 15 to 31: score 5.0, E = 2.9
*->CssClsapdpmgCgWCss<-*
Cs+C+ a + +CgW+ s
Y110A2AL.1 15 CSLCTLAVIF-NCGWDDS 31
Galactosyl_T: domain 1 of 2, from 72 to 158: score 14.0, E = 0.008
*->arRnaiRkTWmnennsegvadgrikslFlvGlsakgdqklkklvmeE
+rR++ R+TW +++ +++ F vG+ ++l eE
Y110A2AL.1 72 ERRQNVRDTWFRLSTKGP---SVFIAKFAVGTMG-LAAEDRRLLAEE 114
akrtlygDiivvD.leDsYenLtlKtltlllyvvskcpsakligKiD<-*
+ ++gD +D++e+sYe+L+ Ktl+ + ++ +++ +k+ +K+D
Y110A2AL.1 115 NE--KFGDLALLDrHEESYERLAKKTLACFVHAFANFK-FKFFLKTD 158
Galactosyl_T: domain 2 of 2, from 205 to 259: score 32.3, E = 5.3e-08
*->csrNgnkyPpYvsGpfYlisrdAaplilkaskhrnfltiEDvliTGi
c+r y pY G +Y++s ++ + + +++ + +++EDv + G+
Y110A2AL.1 205 CDR----YLPYQLGGGYVLSYELIRFLAINAQLFRHYRNEDVSV-GA 246
laddlgIsrinlp<-*
+ l+++++++p
Y110A2AL.1 247 WIGGLDVKYVHDP 259