Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y108G3AL.1
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Query:  Y108G3AL.1  CE27593  locus:cul-3  status:Confirmed TR:Q95Y32 protein_id:AAK72067.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Cullin   Cullin family                                 1248.7          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cullin     1/1      25   777 .]     1   850 []  1248.7        0

Alignments of top-scoring domains:
Cullin: domain 1 of 1, from 25 to 777: score 1248.7, E = 0
                   *->vdfeetWekLkpginqilrnekdmadTnvdvrksmtklsymeLYtnV
                      +++++tWe Lk++i++i+r             k++++ls++eLY+n+
  Y108G3AL.1    25    QYVTQTWELLKRAIQEIQR-------------KNNSGLSFEELYRNA 58

                   YniclskslstslrgSpvrtggAdrlGekLYnrLkeyvVifaklikeyva
                   Y+++l+k                  +Ge+LYn Lk++       i++++a
  Y108G3AL.1    59 YTMVLHK------------------HGERLYNGLKDV-------IQDHMA 83

                   alrkrvWislsndellLetyvkeWerftvsakiinniFkYLnrvwvkker
                   ++r+r+ i+++n++++Let++++W+++tv++ +i++i++Y++r++v ++
  Y108G3AL.1    84 SVRIRI-IESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQN- 131

                   sTdlDlfaqYaavdgkepiyeiytLaLdiWkevlfknFikdklidalLel
                                 +++++++++ L+ +++++++++  i+d+++dalLel
  Y108G3AL.1   132 --------------NHVLPVYNLGLDAYRTEILRQNG-IGDRIRDALLEL 166

                   ieleRkGniinrahlisgvveslveLgiddsDtdAkeakkkklsvYkesF
                   i+l+Rk+n+in++  i++++++l++Lgid+            ++vY+++F
  Y108G3AL.1   167 IKLDRKSNQINWH-GIKNACDMLISLGIDS------------RTVYEDEF 203

                   EkpFLsaTeefYkkessnyLqelnsvteYmkkaekrLeeEseerakrYLh
                   E+p+L++T+++Y+++++n+L+++n+ ++Y++++e+ +++E ++ra+rYL+
  Y108G3AL.1   204 ERPLLKETSDYYRDVCKNWLSGDNDACFYLAQVEIAMHDE-ASRASRYLD 252

                   esRsntkkkLlevcenvLItshldtLhaefsggvkelidakkiedLqrmY
                   ++   t++k+l+v+++v++++h++t++++++ggvk+++++kkiedL+r++
  Y108G3AL.1   253 KM---TEAKILQVMDDVMVAEHIQTIVYMQNGGVKFMLEHKKIEDLTRIF 299

                   rLlrr......vpnGeleelrksleeyikkeGlnaisnlaseagegkMkl
                   r+++r +++ +vp+G+l++l+k+++ey++++G+n+++n++
  Y108G3AL.1   300 RIFKRigdsvtVPGGGLKALLKAVSEYLNETGSNIVKNED---------- 339

                   allsalatdPktyVqeLLevhkkfssLvntaFnsavdDagflqaLDkAfe
                        l+++P ++V+eLL+++++fssL++taF+   dD++f+++++++fe
  Y108G3AL.1   340 -----LLKNPVNFVNELLQLKDYFSSLLTTAFA---DDRDFKNRFQHDFE 381

                   tFVNsnevsklappaksssksaELLAkYcDdLLkKsklsKkadetelEdk
                   tF Nsn++s+            E++A+Y+Dd+L+++   K+++++e+++k
  Y108G3AL.1   382 TFLNSNRQSP------------EFVALYMDDMLRSG--LKCVSDAEMDNK 417

                   LdevivvFkYiedKDVFekyYkkmLAKRLiletSaSdDaEemMisKLKqa
                   Ld+v+++F+Y+++KDVFeky+k++LAKRL+l++S+SdD+E+++++KLK++
  Y108G3AL.1   418 LDNVMILFRYLQEKDVFEKYFKQYLAKRLLLDKSCSDDVEKALLAKLKTE 467

                   cGPyefTsKLerMFqDislSkdLnqsFkhslaNadmakpkyiDfnvrVLt
                   cG ++fT+KLe+MF+D++l+ +L++sF+++++ a+++k++ iD++ rVLt
  Y108G3AL.1   468 CG-CQFTQKLENMFRDKELWLTLATSFRDWRE-AQPTKMS-IDISLRVLT 514

                   sgaWPtqstspsveisLPkeLedsleeFeeFYsskHnGRKLtWlhsLsrG
                   +g+WPt+  ++++ + LP+eL+ ++e+F+++Y++kH+GRKLt++++L+++
  Y108G3AL.1   515 AGVWPTV--QCNP-VVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNA 561

                   evkanfnpgkka........................tYvLqvttfQmaiL
                   +vka+f+p++ka+ +++++++++++++++ +++++++++Lqv+t+Qm+iL
  Y108G3AL.1   562 DVKATFYPPPKAsmsneengpgpsssgesmkerkpeHKILQVNTHQMIIL 611

                   LlFNdrlrdsitveeiqeltdaTeipedeLkrtlqSLllikakvlvllkk
                   L+FN++  ++i+++++ +   +++ipe+eLkr+lqSL+l+ka++++l++k
  Y108G3AL.1   612 LQFNHH--NRISCQQLMD---ELKIPERELKRNLQSLALGKASQRILVRK 656

                   skkedevKesereltpdtkFsvNenFssknKkvRvkinanlvqplqkeae
                   +k++d+       ++++++F+vN+nF  ++K++Rvk++  +v+ + +e+e
  Y108G3AL.1   657 NKGKDA-------IDMSDEFAVNDNF--QSKLTRVKVQ--MVTGK-VESE 694

                   qEteevhetVeeDRklelqAaIVRIMKaRKkLkHnqLvtEviqQlksRFk
                   +E++e++++Ve+DRkle++AaIVRIMKaRKkL+Hn+Lv+Ev+qQl++RF+
  Y108G3AL.1   695 PEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFM 744

                   PsvsmIKkcIEsLIEKeYleRdeddkdtYeYLA<-*
                   Ps+++IK++IE+LIE+eYl+Rde+d+++Y+Y+A
  Y108G3AL.1   745 PSPIIIKQRIETLIEREYLARDEHDHRAYQYIA    777



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