Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y108G3AL.1
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Query: Y108G3AL.1 CE27593 locus:cul-3 status:Confirmed TR:Q95Y32 protein_id:AAK72067.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cullin Cullin family 1248.7 0 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Cullin 1/1 25 777 .] 1 850 [] 1248.7 0
Alignments of top-scoring domains:
Cullin: domain 1 of 1, from 25 to 777: score 1248.7, E = 0
*->vdfeetWekLkpginqilrnekdmadTnvdvrksmtklsymeLYtnV
+++++tWe Lk++i++i+r k++++ls++eLY+n+
Y108G3AL.1 25 QYVTQTWELLKRAIQEIQR-------------KNNSGLSFEELYRNA 58
YniclskslstslrgSpvrtggAdrlGekLYnrLkeyvVifaklikeyva
Y+++l+k +Ge+LYn Lk++ i++++a
Y108G3AL.1 59 YTMVLHK------------------HGERLYNGLKDV-------IQDHMA 83
alrkrvWislsndellLetyvkeWerftvsakiinniFkYLnrvwvkker
++r+r+ i+++n++++Let++++W+++tv++ +i++i++Y++r++v ++
Y108G3AL.1 84 SVRIRI-IESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQN- 131
sTdlDlfaqYaavdgkepiyeiytLaLdiWkevlfknFikdklidalLel
+++++++++ L+ +++++++++ i+d+++dalLel
Y108G3AL.1 132 --------------NHVLPVYNLGLDAYRTEILRQNG-IGDRIRDALLEL 166
ieleRkGniinrahlisgvveslveLgiddsDtdAkeakkkklsvYkesF
i+l+Rk+n+in++ i++++++l++Lgid+ ++vY+++F
Y108G3AL.1 167 IKLDRKSNQINWH-GIKNACDMLISLGIDS------------RTVYEDEF 203
EkpFLsaTeefYkkessnyLqelnsvteYmkkaekrLeeEseerakrYLh
E+p+L++T+++Y+++++n+L+++n+ ++Y++++e+ +++E ++ra+rYL+
Y108G3AL.1 204 ERPLLKETSDYYRDVCKNWLSGDNDACFYLAQVEIAMHDE-ASRASRYLD 252
esRsntkkkLlevcenvLItshldtLhaefsggvkelidakkiedLqrmY
++ t++k+l+v+++v++++h++t++++++ggvk+++++kkiedL+r++
Y108G3AL.1 253 KM---TEAKILQVMDDVMVAEHIQTIVYMQNGGVKFMLEHKKIEDLTRIF 299
rLlrr......vpnGeleelrksleeyikkeGlnaisnlaseagegkMkl
r+++r +++ +vp+G+l++l+k+++ey++++G+n+++n++
Y108G3AL.1 300 RIFKRigdsvtVPGGGLKALLKAVSEYLNETGSNIVKNED---------- 339
allsalatdPktyVqeLLevhkkfssLvntaFnsavdDagflqaLDkAfe
l+++P ++V+eLL+++++fssL++taF+ dD++f+++++++fe
Y108G3AL.1 340 -----LLKNPVNFVNELLQLKDYFSSLLTTAFA---DDRDFKNRFQHDFE 381
tFVNsnevsklappaksssksaELLAkYcDdLLkKsklsKkadetelEdk
tF Nsn++s+ E++A+Y+Dd+L+++ K+++++e+++k
Y108G3AL.1 382 TFLNSNRQSP------------EFVALYMDDMLRSG--LKCVSDAEMDNK 417
LdevivvFkYiedKDVFekyYkkmLAKRLiletSaSdDaEemMisKLKqa
Ld+v+++F+Y+++KDVFeky+k++LAKRL+l++S+SdD+E+++++KLK++
Y108G3AL.1 418 LDNVMILFRYLQEKDVFEKYFKQYLAKRLLLDKSCSDDVEKALLAKLKTE 467
cGPyefTsKLerMFqDislSkdLnqsFkhslaNadmakpkyiDfnvrVLt
cG ++fT+KLe+MF+D++l+ +L++sF+++++ a+++k++ iD++ rVLt
Y108G3AL.1 468 CG-CQFTQKLENMFRDKELWLTLATSFRDWRE-AQPTKMS-IDISLRVLT 514
sgaWPtqstspsveisLPkeLedsleeFeeFYsskHnGRKLtWlhsLsrG
+g+WPt+ ++++ + LP+eL+ ++e+F+++Y++kH+GRKLt++++L+++
Y108G3AL.1 515 AGVWPTV--QCNP-VVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNA 561
evkanfnpgkka........................tYvLqvttfQmaiL
+vka+f+p++ka+ +++++++++++++++ +++++++++Lqv+t+Qm+iL
Y108G3AL.1 562 DVKATFYPPPKAsmsneengpgpsssgesmkerkpeHKILQVNTHQMIIL 611
LlFNdrlrdsitveeiqeltdaTeipedeLkrtlqSLllikakvlvllkk
L+FN++ ++i+++++ + +++ipe+eLkr+lqSL+l+ka++++l++k
Y108G3AL.1 612 LQFNHH--NRISCQQLMD---ELKIPERELKRNLQSLALGKASQRILVRK 656
skkedevKesereltpdtkFsvNenFssknKkvRvkinanlvqplqkeae
+k++d+ ++++++F+vN+nF ++K++Rvk++ +v+ + +e+e
Y108G3AL.1 657 NKGKDA-------IDMSDEFAVNDNF--QSKLTRVKVQ--MVTGK-VESE 694
qEteevhetVeeDRklelqAaIVRIMKaRKkLkHnqLvtEviqQlksRFk
+E++e++++Ve+DRkle++AaIVRIMKaRKkL+Hn+Lv+Ev+qQl++RF+
Y108G3AL.1 695 PEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFM 744
PsvsmIKkcIEsLIEKeYleRdeddkdtYeYLA<-*
Ps+++IK++IE+LIE+eYl+Rde+d+++Y+Y+A
Y108G3AL.1 745 PSPIIIKQRIETLIEREYLARDEHDHRAYQYIA 777