Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y105E8A.20
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Query: Y105E8A.20 CE29839 status:Partially_confirmed TR:Q8WQA1 protein_id:CAD21672.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tRNA-synt_1 tRNA synthetases class I (I, L, M and 26.9 5.2e-07 2
tRNA-synt_1e tRNA synthetases class I (C) 23.9 4.2e-06 1
Myosin_tail Myosin tail 11.9 0.028 1
Glycos_transf_1 Glycosyl transferases group 1 5.0 4 1
APC10 Anaphase-promoting complex, subunit 1 2.6 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Myosin_tail 1/1 27 70 .. 822 864 .] 11.9 0.028
tRNA-synt_1 1/2 199 236 .. 40 75 .. 3.3 2.7
Glycos_transf_1 1/1 359 387 .. 94 122 .. 5.0 4
tRNA-synt_1e 1/1 476 512 .. 379 419 .. 23.9 4.2e-06
tRNA-synt_1 2/2 484 524 .. 662 735 .] 23.2 6e-06
APC10 1/1 711 721 .. 211 221 .] 2.6 9.2
Alignments of top-scoring domains:
Myosin_tail: domain 1 of 1, from 27 to 70: score 11.9, E = 0.028
*->iaqinlsKyRkaQ...reLEdAEERADqAEsslnklRqreaKsRrs<
+++ +l ++R+a ++++++E+AEE AD AE+ + R ++ Rr+
Y105E8A.20 27 LRNEELHRFRQAVpppQQAEEAEEEADVAENVVEQNR--LGPIRRG 70
-*
Y105E8A.20 - -
tRNA-synt_1: domain 1 of 2, from 199 to 236: score 3.3, E = 2.7
*->lHmGHalnktlkDiiiRykrMq..GfnVlylpGWDhhG<-*
+H+GHa +l D+ R++r++++G + + +G+D+hG
Y105E8A.20 199 PHIGHAYTAVLCDVAHRWNRLKhpGAQAQFSIGTDEHG 236
Glycos_transf_1: domain 1 of 1, from 359 to 387: score 5.0, E = 4
*->dedlpelyksadvfvlPSryEgFGivllE<-*
+e++ e++++ +++v+PS y + ++ lE
Y105E8A.20 359 REKVAEWINRENIVVHPSKYKSLALTSLE 387
tRNA-synt_1e: domain 1 of 1, from 476 to 512: score 23.9, E = 4.2e-06
*->GhvmiRDRRegeKMSKSLGNfltirDvLkkydpevLRyfll<-*
Gh i ++ KMSKSLGN++ ++++k+++e LRyfll
Y105E8A.20 476 GHWLI----DNVKMSKSLGNVVNPSEAITKFTAEGLRYFLL 512
tRNA-synt_1: domain 2 of 2, from 484 to 524: score 23.2, E = 6e-06
*->KMSKSkGNvidPldvieGILeDLhaKllggnlqpqeveKakqkkFpn
KMSKS+GNv++P + i
Y105E8A.20 484 KMSKSLGNVVNPSEAIT------------------------------ 500
GIpkyGADaLRlyLlsssppgqdiafs<-*
k A+ LR++Ll p d f
Y105E8A.20 501 ---KFTAEGLRYFLLKHGNPSYDCSFN 524
APC10: domain 1 of 1, from 711 to 721: score 2.6, E = 9.2
*->svdfvtyatir<-*
s++fvty+tir
Y105E8A.20 711 SLLFVTYDTIR 721