Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y105E8A.10
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Query: Y105E8A.10 CE29831 status:Partially_confirmed TR:Q8WQB2 protein_id:CAD21661.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF608 Protein of unknown function, DUF608 816.5 9.6e-242 1
MmgE_PrpD MmgE/PrpD family 2.4 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MmgE_PrpD 1/1 700 734 .. 1 37 [. 2.4 7.8
DUF608 1/1 522 890 .. 1 428 [] 816.5 9.6e-242
Alignments of top-scoring domains:
MmgE_PrpD: domain 1 of 1, from 700 to 734: score 2.4, E = 7.8
*->dsvteqlAdyvasvryssippdvealetakkllLDtl<-*
+v+ ++A++ + +++++ +le+akk+++Dtl
Y105E8A.10 700 LRVAIEMAGLMKDDETQQLFR--NTLEKAKKVFIDTL 734
DUF608: domain 1 of 1, from 522 to 890: score 816.5, E = 9.6e-242
*->GRFgYlEgpevYrmlNTyDVhfeYaLSfaLlmLfPeLelSiqrdFad
GRFgYlE++e Yrm+NTyDVhf Ya SfaL++L+PeLe++iq++F+d
Y105E8A.10 522 GRFGYLESWE-YRMVNTYDVHF-YA-SFALAELWPELEITIQSEFTD 565
avlkeDnkerkflsdGevanLmKYKEerKvkgavPHDLGkpddtikkiik
+v+++++k+++f+++G++an +K++++vPHDLG+p+
Y105E8A.10 566 QVYHSIEKPTRFHMEGDWAN-------VKTASRVPHDLGNPA-------- 600
etiedPwietNaYnlhvDtyrWKDLNpkFVLlvYRDfvLlatgDreedFL
++Pwi+tNaY++h Dt++WKDLN+k+VL+++RD+v ++++++edFL
Y105E8A.10 601 ---DEPWIATNAYVMH-DTGKWKDLNMKYVLTSWRDYV--VLSNEHEDFL 644
kevypsvraimddylertfDkDNLPYLtLPsGiEWmRHvnnmLKvsDAHK
++++p+vr+im+++le+ +D+D+
Y105E8A.10 645 FHTWPAVRMIMLEALEN-WDQDG--------------------------- 666
DGliEneGfpDQTYDaWsmkGvSAYcgsLWiAALqAaiemakllgdnniq
DG+iEn+G++DQTYDaW+m+GvSAYcgsLW+A+L++aiema+l++d+++q
Y105E8A.10 667 DGMIENFGKADQTYDAWQMEGVSAYCGSLWLASLRVAIEMAGLMKDDETQ 716
dlyeekLekAkevyekkLWNGsYFnnWyDessssnsksimADQLcGqWYa
+l++++LekAk+v++++LW+G+YF+ ++e+ s++++++mADQLcG+W++
Y105E8A.10 717 QLFRNTLEKAKKVFIDTLWTGTYFR--FCER-SRSRETVMADQLCGYWFL 763
rllGLpL.dpivdedkiksALesIydlNvmkfkaGklGAvNgEmlpdGkV
++++++L d+++++++++sAL++Iy+lNv+kf++G++GAvNg m+p+G+V
Y105E8A.10 764 QSVSPELaDELLPNHMVRSALDTIYRLNVCKFGNGRMGAVNG-MKPSGVV 812
DgssiQsrEvWpGvtYAlAAlMIqkGmveeafktakgvyetlwsegglGy
D+++iQ++E+W+GvtYA+A+l+Iq+G+ve+af+ta+g+y t+++e+ G+
Y105E8A.10 813 DREYIQADEMWTGVTYAVASLLIQQGEVEKAFHTASGSYLTCFEET--GL 860
qFqtPEaitakdeityrslhYmRplsiWamqw<-*
q+qtPEa+++++ +yr+++YmRplsiWamqw
Y105E8A.10 861 QYQTPEALYESK--FYRAIGYMRPLSIWAMQW 890