Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/W10G6.3
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Query:  W10G6.3  CE18354  locus:ifa-2 intermediate filament protein status:Partially_confirmed TR:O02365 protein_id:CAB03486.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
IF_tail      Intermediate filament tail domain          282.7    4.7e-81   1
filament     Intermediate filament protein              247.0    2.7e-70   1
Myosin_tail  Myosin tail                                  6.8       0.59   1
Ran_BP1      RanBP1 domain                                6.0        1.9   1
ferritin     Ferritin-like domain                         4.9        3.9   1
Tropomyosin  Tropomyosin                                  4.2        3.3   1
Pox_mRNA-cap Poxvirus mRNA capping enzyme, small subu     2.9        5.6   1
DUF707       Protein of unknown function (DUF707)         2.7        5.8   1
Pox_A11      Poxvirus A11 Protein                         1.3        6.9   1
Cnd1         Non-SMC condensin subunit, XCAP-D2/Cnd1      0.5        9.4   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
DUF707         1/1      58   109 ..   290   345 .]     2.7      5.8
Cnd1           1/1     142   151 ..  1244  1253 .]     0.5      9.4
ferritin       1/1     141   159 ..   137   155 .]     4.9      3.9
Ran_BP1        1/1     148   166 ..   109   127 .]     6.0      1.9
Myosin_tail    1/1     122   169 ..   158   205 ..     6.8     0.59
Tropomyosin    1/1     144   204 ..     1    54 [.     4.2      3.3
Pox_A11        1/1     193   207 ..   160   174 ..     1.3      6.9
Pox_mRNA-cap   1/1     315   333 ..   269   287 .]     2.9      5.6
filament       1/1      70   423 ..     1   359 []   247.0  2.7e-70
IF_tail        1/1     438   574 ..     1   144 []   282.7  4.7e-81

Alignments of top-scoring domains:
DUF707: domain 1 of 1, from 58 to 109: score 2.7, E = 5.8
                   *->eegkapwqgvrerckrEwtmvdnrpevrmksfvemkrFqeRvkkAek
                      +++ +   + rer+k+E  +     + r+ s++e  rF +  ++
     W10G6.3    58    QNAASTIRDNREREKKEIME----LNDRLASYIEKVRFLDAQNRKLD 100

                   dyfkslavk<-*
                   +++k l+ +
     W10G6.3   101 ADLKMLQGR    109

Cnd1: domain 1 of 1, from 142 to 151: score 0.5, E = 9.4
                   *->nekglkKLlD<-*
                      +ek ++KL+D
     W10G6.3   142    TEKEIRKLQD    151

ferritin: domain 1 of 1, from 141 to 159: score 4.9, E = 3.9
                   *->eqeehiwmleaqltnlkrl<-*
                      e e++i +l++ql+ l++
     W10G6.3   141    ETEKEIRKLQDQLDELRKK    159

Ran_BP1: domain 1 of 1, from 148 to 166: score 6.0, E = 1.9
                   *->KtkEeAdeFKkkFEeaqke<-*
                      K ++  de+ kkFEeaq+
     W10G6.3   148    KLQDQLDELRKKFEEAQRG    166

Myosin_tail: domain 1 of 1, from 122 to 169: score 6.8, E = 0.59
                   *->qaEvddllaqldsitKaKlnaEKkakqlEsQlsElqvKldElqRqln
                      ++E+   ++ + +  K+ ++ EK +++l++Ql El+ K +E+qR +
     W10G6.3   122    EMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEEAQRGRA 168

                   D<-*
                   +
     W10G6.3   169 E    169

Tropomyosin: domain 1 of 1, from 144 to 204: score 4.2, E = 3.3
                   *->KKiqqteeeldkaeEelekaqr.......eLeeeekkreeAEaEVAs
                      K i++++++ld+   + e+aqr++ +++ +++   + + + EaE+
     W10G6.3   144    KEIRKLQDQLDELRKKFEEAQRgraedrlKIDDLLVTLSNLEAEINL 190

                   LNRRIQLvEEeLdR<-*
                   L RRI L+EEe  R
     W10G6.3   191 LKRRIALLEEEVAR    204

Pox_A11: domain 1 of 1, from 193 to 207: score 1.3, E = 6.9
                   *->KRiqLLEeEVanLRn<-*
                      +Ri LLEeEVa L++
     W10G6.3   193    RRIALLEEEVARLKK    207

Pox_mRNA-cap: domain 1 of 1, from 315 to 333: score 2.9, E = 5.6
                   *->SdsKSIENeyQkkLvKLLl<-*
                      S ++  EN yQk  vK L+
     W10G6.3   315    SNRQNAENNYQKEEVKRLR    333

filament: domain 1 of 1, from 70 to 423: score 247.0, E = 2.7e-70
                   *->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa
                       EK ++++LNDRLAsYI+KVRfL++qN++L++ ++ l+++  +
     W10G6.3    70    REKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQGRFGK---- 112

                   svsrlyslYeteieeLRrqidqltnerarlqlEidnlrealedfrkKyed
                   s   ++ +Ye ei  + +++ q++++ +  + Ei +l++ l+++rkK+e+
     W10G6.3   113 STGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEE 162

                   KeDLaaQn.......qlkdlEialntkeaeLaTaL.eRqeaEndlvgLRa
                        aQ ++ +++ ++ dl + l  +eae + + +  + +E++++ L+
     W10G6.3   163 -----AQRgraedrlKIDDLLVTLSNLEAEINLLKrRIALLEEEVARLKK 207

                   QiAklE.sla.aRkdlDeaTLarvDLEnkvEsLqEElaFLKknHeEEvke
                    + +l + l + R +lD++TL r+D +nkv +  EE++F+K+ +e E+ke
     W10G6.3   208 ENFRLTsELQrVRIELDQETLLRIDNQNKVKTILEEIDFMKRGFETELKE 257

                   LqaqiqdtgqvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqeaE
                   Lqaq++++  ++ E ++++    k++L+ a+r+iRa+Y++i++ nr ++E
     W10G6.3   258 LQAQAARD--TTSENREYF----KNELANAMRDIRAEYDQIMNGNRNDME 301

                   ewYksKleeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqna
                   +wY+ +++e++t+ +r++++  ++KeE++ lR q  +L+ +L +l+s n
     W10G6.3   302 SWYQLRVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQKLSDLESRNL 351

                   sLErqlaElEeryeaelaqyqalisqlEeeLqqlreEMarqLrEYQeLLd
                    LE+q+++l++++e +++ y+a+++++++++++lreE++++  E+Q LLd
     W10G6.3   352 LLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQALMVELQMLLD 401

                   VKlaLDiEIATYRKLLEGEEsR<-*
                   +K+ LD E   YR +LEG  +
     W10G6.3   402 TKQTLDGELKVYRQMLEGNSEG    423

IF_tail: domain 1 of 1, from 438 to 574: score 282.7, E = 4.7e-81
                   *->ssaekgkrrsiregeGritetssktsyqrsAkGnVsIeEaDpeGKFv
                      +++e+++++++r+++G   e+ss+tsyqrsAkGnV+I+E +peGKFv
     W10G6.3   438    AINEEADTETMRVVKG---EHSSRTSYQRSAKGNVAIKETSPEGKFV 481

                   rLeNtSrskkdeslGgWkLkRkidgkeereivYkFppkfvLkpgqtVkIW
                   +LeNt+r+ k+e+lG+WkLkRkidgk  reiv++Fp++++L+p q+VkI+
     W10G6.3   482 ILENTHRA-KEEPLGDWKLKRKIDGK--REIVFTFPSDYILHPFQSVKIF 528

                   AagaGavhsPPsdLvwksqdsWGtGsnvrTiLvNseGEEvAshtqkt<-*
                   A+g+G +++PP+ L+++++ ++G+G+nv+TiL+N +GEE+A+h+q++
     W10G6.3   529 ARGQG-IANPPEVLIFEGDETFGVGANVQTILYNNKGEERATHIQRQ    574

	[output cut off at A = 10 top alignments]


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