Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W09G10.5
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Query: W09G10.5 CE14772 status:Partially_confirmed TR:O16641 protein_id:AAB66113.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lectin_c Lectin C-type domain 31.7 8.8e-07 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
lectin_c 1/1 103 164 .. 55 125 .] 31.7 8.8e-07
Alignments of top-scoring domains:
lectin_c: domain 1 of 1, from 103 to 164: score 31.7, E = 8.8e-07
*->integtwvwegwetdgspvnyt.enWapgePnnrgnhGgnEdCveiy
+ + +++w tdgs v +++W++gePnn g+ + C+ +
W09G10.5 103 CSQITSYYW----TDGSTVGVQgFYWNSGEPNNQGG----QGCAKLI 141
tdtdflaGkWnDepCdskl..pyvCef<-*
t+++ ++D++C + l+++yvC +
W09G10.5 142 TSSS----VLDDVACTTELtnGYVCGK 164