Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W08G11.1
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Query: W08G11.1 CE16558 status:Partially_confirmed TR:
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF268 Caenorhabditis protein of unknown function 459.1 3.8e-134 1
Neuregulin Neuregulin family 3.1 1.8 1
DUF270 Protein of unknown function, DUF270 2.6 0.26 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF270 1/1 13 20 .. 706 713 .] 2.6 0.26
Neuregulin 1/1 228 237 .. 397 406 .] 3.1 1.8
DUF268 1/1 191 367 .] 1 188 [] 459.1 3.8e-134
Alignments of top-scoring domains:
DUF270: domain 1 of 1, from 13 to 20: score 2.6, E = 0.26
*->PLvVFYRF<-*
P++VF+RF
W08G11.1 13 PITVFFRF 20
Neuregulin: domain 1 of 1, from 228 to 237: score 3.1, E = 1.8
*->qEELqARLss<-*
qEE q RLss
W08G11.1 228 QEEFQDRLSS 237
DUF268: domain 1 of 1, from 191 to 367: score 459.1, E = 3.8e-134
*->dgmsGvViGSmqPwvEVsaLqhGnylkPnkAskiLTvEyneriLeIe
dg sG V+GSmqPwvEV+aL++G A kiLTvEyn+ LeI+
W08G11.1 191 DGLSGFVVGSMQPWVEVMALKNG-------ARKILTVEYNK--LEIQ 228
eefrdRedlSSilPtdFaknwkkYaesFDFAAsFssIEhsGLGrYGdPlD
eef+dR lSSilP++Faknw++Ya++ DFAAsFssIEhsGLGrYGdP+D
W08G11.1 229 EEFQDR--LSSILPVEFAKNWQEYAGKLDFAASFSSIEHSGLGRYGDPID 276
PiGDLREmlKIkCvLKkGGLLFLGlPlGtDAlqFnahRIYGsvRLAMmfa
PiGDLREmlKIkC+LK+GGLLFLGlPlGtDA+q+nahRIYGs+RLAMmf+
W08G11.1 277 PIGDLREMLKIKCMLKQGGLLFLGLPLGTDAIQYNAHRIYGSIRLAMMFY 326
GFEWiaTFSgdseksidLtsqrldsknlFgliqyTLVLRKl<-*
GFEW++T+Sgdse+++d++s+rl+ k +Fgl+q+TLVLRKl
W08G11.1 327 GFEWLDTYSGDSEEAFDFNSARLHYKGTFGLTQHTLVLRKL 367