Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W07B8.5
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Query: W07B8.5 CE14682 locus:cpr-5 thiol protease status:Confirmed SW:P43509 protein_id:AAB65346.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C1 Papain family cysteine protease 404.1 2.2e-120 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_C1 1/1 82 337 .. 1 337 [] 404.1 2.2e-120
Alignments of top-scoring domains:
Peptidase_C1: domain 1 of 1, from 82 to 337: score 404.1, E = 2.2e-120
*->lPesfDWRe.Wkgga.VtpVKdQGiqCGSCWAFSavgalEgrycikt
+P++fD+R++W+++ +++ ++dQ+ CGSCWAF+a++a+++r ci++
W07B8.5 82 IPDHFDARDqWPNCMsINNIRDQS-DCGSCWAFAAAEAISDRTCIAS 127
gtkawggklvsLSEQqLvDCdgedygnngesCGyGCnGGGlmdnAfeYik
+ g ++ LS +L++C++ g + sCG+GC+G G++++A+++++
W07B8.5 128 N----GAVNTLLSSEDLLSCCT---GMF--SCGNGCEG-GYPIQAWKWWV 167
keqIsnNgGlvtEsdYe.k.gCkPYtdf.PCgkdggndtyy.pCpgkayd
k +Glvt+++Ye++ gCkPY+ + PCg+ + n++++++Cp+++
W07B8.5 168 K------HGLVTGGSYEtQfGCKPYS-IaPCGETV-NGVKWpACPEDTE- 208
pndTgtCkynckknskypktyakikgygdvpynvsTydEealqkalaknG
+T++C +c+++++y + y ++k++g+ +y v+ + +e++q ++ +nG
W07B8.5 209 --PTPKCVDSCTSKNNYATPYLQDKHFGSTAYAVG-KKVEQIQTEILTNG 255
PvsVaidasedskgDFqlYksGendvgyGvYkhtsageCggtpfteLdHA
P++Va++++e DF+ Y++G vY+ht ag+ g +HA
W07B8.5 256 PIEVAFTVYE----DFYQYTTG-------VYVHT-AGASLG------GHA 287
VliVGYGteneggtfdetssskksesgiqvssgsngssgSSgssgapied
V+i G+G++n g
W07B8.5 288 VKILGWGVDN-G-------------------------------------- 298
kgkdYWIVKNSWGtdWGEnGYfriaRgknksgkneCGIaseasypi<-*
++YW+V+NSW+ WGE+GYfri+Rg n eCGI+ +a+++i
W07B8.5 299 --TPYWLVANSWNVAWGEKGYFRIIRGLN-----ECGIEHSAVAGI 337