hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W06D4.6
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Query:  W06D4.6  CE25143  locus:rad-54 SNF2 and others N-terminal domain status:Partially_confirmed TR:Q9XW40 protein_id:CAA22254.2

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
SNF2_N     SNF2 family N-terminal domain                358.0   9.8e-104   1
helicase_C Helicase conserved C-terminal domain          88.1    1.5e-23   1
Not1       CCR4-Not complex component, Not1               3.7          4   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SNF2_N       1/1     205   513 ..     1   356 []   358.0 9.8e-104
Not1         1/1     578   610 ..     1    37 [.     3.7        4
helicase_C   1/1     588   662 ..     1    72 []    88.1  1.5e-23

Alignments of top-scoring domains:
SNF2_N: domain 1 of 1, from 205 to 513: score 358.0, E = 9.8e-104
                   *->YQleGvnWLislyknlvkkendscglggILADEMGLGKTlQtIslla
                      +Q++Gv+++++++++     n    +g+I+ADEMGLGKTlQ+Isll+
     W06D4.6   205    HQRDGVKFMWDCVTG----INIPEFHGCIMADEMGLGKTLQCISLLW 247

                   yllelkpkaek.rigpfLvVcPlStldnWlnEfekWapddlnivvyygdg
                   +ll+++p a  ++ +++++VcP+S+++nW  E++kW++ +ln+ +    +
     W06D4.6   248 TLLRQSPDA-CpTVSKSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGK 296

                   nsrdqirkdellrnflkdggr.lkydvlitsYeiirkNkLlkdkdeLkkl
                   +++      + l  f+ d + +   +vli+sYe+ r      +   L++
     W06D4.6   297 REQ----IIACLNSFMADSKMrCAIPVLIISYETFRL-----YANILHS- 336

                   ginwdylilDEgHHrlKNedSklrkskalnklkhtrnRLlLTGTPlQNnL
                     ++  +i+DEg HrlKN++  +  ++al  lk + +R+l++GTP+QN+L
     W06D4.6   337 -GDVGIVICDEG-HRLKNSENLT--YQALSGLK-CARRVLISGTPIQNDL 381

                   kElwsLlnFlmPgiFgsleeyindgksFdkwfnnpilegrdsavLadasl
                    E++sL+nF++Pg++g++       ++F+k+f+n il grd    adas
     W06D4.6   382 LEYFSLVNFVNPGLLGTA-------SEFRKKFENAILKGRD----ADAS- 419

                   aLrrkkdveeglkllnrLhkilkpflLRRlkkdveksLpppeKteyvlfc
                       ++d+++g+++++++  ++ ++++RR+ + + k+Lp   K+e+++ c
     W06D4.6   420 ----SEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYLPV--KYEHIICC 463

                   klsklQkelYkkflkgeskdvkaindserreggkeknegksrllnlimqL
                   k s lQ+ lY k++ + +k+  ++++++   g        ++ l  i++L
     W06D4.6   464 KNSTLQETLYNKLI-ECEKQNRIVEKDK---G------ATASALSFITHL 503

                   rKicNfHPyLf<-*
                   +K+cN HPyL+
     W06D4.6   504 KKLCN-HPYLV    513

Not1: domain 1 of 1, from 578 to 610: score 3.7, E = 4
                   *->sllsELatirthdaedilesitrqelvsilsaFlntF<-*
                       +++EL+  r+ d++++  s+     + + s +  tF
     W06D4.6   578    DQFMELCKLRGYDFVRLDGSM----SIKQRSKIVDTF    610

helicase_C: domain 1 of 1, from 588 to 662: score 88.1, E = 1.5e-23
                   *->gikvarlhGglsqeeReeilekFrngks...kvLvaTdvaarGiDip
                      g++++rl+G++s ++R +i++ F++  s+  ++L+++++++ G+++
     W06D4.6   588    GYDFVRLDGSMSIKQRSKIVDTFNDPAStifCFLLSSKAGGCGLNLI 634

                   dvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ++n  +++d++wnp+++ Q++ R++R+G
     W06D4.6   635 GANRLVMFDPDWNPANDDQAMARVWRDG    662

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