Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W06D4.1
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Query: W06D4.1 CE29602 locus:hgo-1 HOMOGENTISATE 1,2-DIOXYGENASE (EC 1.13.11.5) (HOMOGENTISICASE) (HOMOGENTISATE OXYGENASE) (HOMOGENTISIC ACI
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HgmA homogentisate 1,2-dioxygenase 1117.5 0 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HgmA 1/1 6 433 .. 1 474 [] 1117.5 0
Alignments of top-scoring domains:
HgmA: domain 1 of 1, from 6 to 433: score 1117.5, E = 0
*->elkYlsGFGnefsssdEAvpGALPvGqNSPQkcpYGLYAEQLSGsAF
elkYl+GFGne+++sd++vp+ALPvGqNSPQkc++GLYAEQLSG+AF
W06D4.1 6 ELKYLTGFGNEHATSDPRVPDALPVGQNSPQKCSHGLYAEQLSGTAF 52
TaPRheNrRSWLYRIrPSaaHepfeprksntigehltaefneehsldPNq
TaPR++N+RSWLYRIrPS+ H+pfe +k+n ++h+t++f++ ++ +PNq
W06D4.1 53 TAPRSQNQRSWLYRIRPSVIHRPFEAMKEN--DQHWTNNFSSIPP-NPNQ 99
LRWkPlpiPskeptDFVeGLhtiaGagdpLLlsrhGlAihvYsankSMen
+RW+P+p+P+ke ++FV++L+t++G gd+ +sr+GlAih++s+n+SMe+
W06D4.1 100 YRWNPFPLPTKEGVTFVDNLYTVCGGGDV--ISRTGLAIHQFSCNASMEH 147
klFyRNADGDlLiVPqqGeLdltTEfGrleVePgeIaVIPRGvrFrVevl
+++y N+DGD+LiVPqqG+L++tTEfGrl+V+P+eIaVIP+G+rF+V v+
W06D4.1 148 TAMY-NSDGDFLIVPQQGALEITTEFGRLLVNPQEIAVIPQGIRFSVAVR 196
DgpaRGYicEnyGahfqLPkDYRndLGPIGaNGLANPRDFkaPVinDqFR
gp+RGYi+E+yG+hfqLP dLGPIGaNGLANPRDF+aPV
W06D4.1 197 -GPSRGYILEVYGTHFQLP-----DLGPIGANGLANPRDFEAPV------ 234
AayeDeetpgeytvivKfqGkLftaeqdhsPlDVVAWHGNYvPYALskYD
A++eD ++ e+t+i+K+qG++f+a+q+hsP+DVV+WHGNYvPY kYD
W06D4.1 235 AWFEDLDV--EFTIINKYQGSWFQAKQGHSPFDVVGWHGNYVPY---KYD 279
LsrFnpinsvsFDHpDPSIFTVLTaPSdepGtAnaDFVICtFPPRWlVaE
L++F++in+vsFDH+DPSIFTVLTaPS+++GtA+aDFVI FPPRW++a+
W06D4.1 280 LKKFMVINTVSFDHCDPSIFTVLTAPSVKHGTAIADFVI--FPPRWGCAD 327
PhTFRPPisYYHRNDDYDEvMSEEiiFYssGqFMGLIrGaYdAKaeGFvP
+TFRPP YYHRN +MSE +MGLI+G+Y+AK++GF+P
W06D4.1 328 -NTFRPP--YYHRN-----CMSE---------YMGLITGCYEAKEGGFKP 360
GGaSLHncMtpHGPDaesfekAsnadLkPtkkFideGTmAFMFEtrlvlq
GG+SLH++MtpHGPD+++fe+AsnadLkP++ ++eGTm+FMFE++l+++
W06D4.1 361 GGGSLHSMMTPHGPDFNCFEMASNADLKPQR--VAEGTMSFMFESSLNMA 408
vtewAlkesenlqddYdkcWqgLkshf<-*
+t+wA ++n+++dY+k+Wq+Lk+hf
W06D4.1 409 ITNWA--VYQNVDKDYYKDWQPLKKHF 433