Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W05G11.6
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Query: W05G11.6 CE19610 phosphoenolpyruvate carboxykinase status:Confirmed TR:O44906 protein_id:AAC71149.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PEPCK Phosphoenolpyruvate carboxykinase 1512.3 0 1
Bacterial_PQQ PQQ enzyme repeat 5.5 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Bacterial_PQQ 1/1 329 349 .. 1 20 [. 5.5 6.6
PEPCK 1/1 46 651 .] 1 608 [] 1512.3 0
Alignments of top-scoring domains:
Bacterial_PQQ: domain 1 of 1, from 329 to 349: score 5.5, E = 6.6
*->gvvyvg.tadGylyAlDadTG<-*
++ + + +adG+lyA++++ G
W05G11.6 329 DIAWMKfGADGRLYAINPEAG 349
PEPCK: domain 1 of 1, from 46 to 651: score 1512.3, E = 0
*->aFveEkaeLcqPeqihiCDGSeeEnkeLierLveqGtlkKLneeKyp
+Fv+EkaeL+ P++i+iCDGS+ E++ ++++Lve+G+l++L+ +y+
W05G11.6 46 RFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLK--AYE 90
NcYLARTDPrDVARVESkTfIcTerqeDavPtnpegvkpqlGnWmsPaem
N+YL+RTDPrDVARVESkT+++T+ ++D+v+++p gv+p++G+Wms++ +
W05G11.6 91 NNYLCRTDPRDVARVESKTWMVTKDKYDSVCHTPDGVRPIMGQWMSEEQF 140
kaalnerFpGCMkGRTMYVIPFSMGPvGsPlsKIGVElTDSpYVVaSMRI
+l++rFpGCM+GR+MYV+P+SMGP+G+PlsK G+ElTDSpYVV++MR
W05G11.6 141 GVELDSRFPGCMAGRPMYVVPYSMGPIGGPLSKNGIELTDSPYVVLCMRT 190
MTRmGtaVLeaLgdndGeFVrCLHSVGaPlpvgqkdvshWPCNpErtlIa
MTRmGt+VLeaLgd +FVrC+HSVG P+pv+qk+++hWPCNpE++ Ia
W05G11.6 191 MTRMGTKVLEALGD-N-DFVRCIHSVGLPRPVKQKVINHWPCNPEKVMIA 238
HfPeereIvSfGSGYGGNSLLGKKCFALRIASriArdEGWLAEHMLILGv
H+P ereI+SfGSGYGGNS LGKKCFALRIA +i+rdEGWLAEHMLI+Gv
W05G11.6 239 HRPKEREIWSFGSGYGGNSILGKKCFALRIACNIGRDEGWLAEHMLIMGV 288
tsPeGekkYiAAAFPSACGKTNLAMLnPPGtlPGWKiecVGDDIAWmKFG
t+PeGe+k+iAAAFPSACGKTNLAML+P t PGWK+++VGDDIAWmKFG
W05G11.6 289 TNPEGEEKFIAAAFPSACGKTNLAMLTP--TVPGWKVRVVGDDIAWMKFG 336
kdGRLrAINPEnGFFGVAPGTSakTNPnAMaTiqkNTIFTNVAlTsDGdV
+dGRL+AINPE+GFFGVAPGTS+kTN +AM ++ +NTIFTNVA+T+DG++
W05G11.6 337 ADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEY 386
wWEGleeelpdPgvt.........lidWlGkpWkaGdteepaAHPNSRFc
+WEGle+el++ +++++++ ++ ++++WlG+ W++Gd e +aAHPNSRF+
W05G11.6 387 FWEGLEKELKEAKGYtdeqlkhleITNWLGERWHIGD-EGKAAHPNSRFT 435
APAsQCPIiDPaWedPeGVPIsAiIFGGRRpaGVPLVyearnWqHGVFmG
APA+QCP i+P+We+P+GVPI+Ai+FGGRRp+GVPLV+e+++W+HG+++G
W05G11.6 436 APAKQCPNIHPDWEAPQGVPIDAIVFGGRRPEGVPLVFESFSWEHGILVG 485
aamrSEaTAAAEhkgktvmhDPFAMrPFfGYNfGdYleHWLslgkrsdea
a ++SE+TAAAE++gk vmhDP+AMrPF+GYN G+YleHW++lgk + +
W05G11.6 486 ALVKSETTAAAEFTGKNVMHDPMAMRPFMGYNYGKYLEHWIKLGKAP--H 533
kLPkIFHVNWFRkdeeGKFLWPGFGeNsRVLkWIlrRve.GkagiAveTp
k PkIFHVNWFR ++++KFLWPGFG+N+RVL+WIlrRv +G+++iA eT+
W05G11.6 534 KAPKIFHVNWFRETKDHKFLWPGFGDNIRVLDWILRRVAgGEEEIAIETA 583
IGyvPakgaLdLeGLddvssvdvskLlsvdkefWeqEveeireyfeeQvG
IGyvP+ g+++L+GL+ +d+ L+s++k++W ++v e r +++ QvG
W05G11.6 584 IGYVPKRGTINLDGLPR---IDWNDLMSIPKDYWVEDVDESRHFLDTQVG 630
adLPkeitaELeaLeqRvkkl<-*
+dLP++i++EL+ Le+Rv++l
W05G11.6 631 SDLPQPIRDELDKLEKRVHAL 651