Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W04C9.1
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Query: W04C9.1 CE28355 locus:haf-4 ABC transporter status:Confirmed TR:Q9TZD9 protein_id:AAC68724.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 198.3 2.9e-56 1
ABC_membrane ABC transporter transmembrane region 150.3 3.4e-41 1
AIG1 AIG1 family 7.3 0.74 1
Flavi_NS4A Flavivirus non-structural protein NS4A 6.5 0.28 1
APS_kinase Adenylylsulfate kinase 4.6 2.9 1
SKI Shikimate kinase 4.2 5.2 2
DUF258 Protein of unknown function, DUF258 3.3 6.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Flavi_NS4A 1/1 222 237 .. 134 149 .] 6.5 0.28
SKI 1/2 344 370 .. 151 183 .] 0.2 72
ABC_membrane 1/1 182 453 .. 1 285 [] 150.3 3.4e-41
AIG1 1/1 527 541 .. 1 15 [. 7.3 0.74
APS_kinase 1/1 525 541 .. 1 17 [. 4.6 2.9
SKI 2/2 527 541 .. 1 15 [. 3.9 6.1
DUF258 1/1 531 546 .. 33 48 .. 3.3 6.3
ABC_tran 1/1 526 709 .. 1 199 [] 198.3 2.9e-56
Alignments of top-scoring domains:
Flavi_NS4A: domain 1 of 1, from 222 to 237: score 6.5, E = 0.28
*->AyllIgilTlVgaVAA<-*
A+ + +i +lV+aVAA
W04C9.1 222 AVYIMTIISLVSAVAA 237
SKI: domain 1 of 2, from 344 to 370: score 0.2, E = 72
*->Yqevadrtidtndqppielnlaeiaseilqtit<-*
Y+ + rt dt +++ +a+e+l+t++
W04C9.1 344 YDLLSERTQDTIAESN------DVAEEVLSTMR 370
ABC_membrane: domain 1 of 1, from 182 to 453: score 150.3, E = 3.4e-41
*->lliailllilagatalvtfplllgrlldsgfplsdgnddh.arssli
+ ++ l++ +t ++ p+++g+++ + + +++ ++ +
W04C9.1 182 HISGFSWLFIYSITRIF-VPYYTGQVIAT---VVATKSYPaLSNAVY 224
slailslfavfvliglllqgsfyllagerlgqrlrkrlfrallrqilglf
++ i+ ++++v+ g+ +++ y r+ +r +lf+ l++q+ ++
W04C9.1 225 IMTII-SLVSAVAAGFRGGSFEYA--YARIQRAIRYDLFHGLVKQDVAFY 271
dsffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivmfy
d +++Ge tsRl+ D+++++d+ ++++ +++++ ++++g +i+m
W04C9.1 272 DA----HKTGEVTSRLAADCQTMSDTVALNVNVFLRNCVMLLGSMIFMMK 317
yswkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEsls
+sw+L+L++++++p++++ s++++ ls++ q+ a+++ vaeE+ls
W04C9.1 318 LSWRLSLVTFILVPIIFVASKIFGTYYDLLSERTQDTIAESNDVAEEVLS 367
girTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisyls
+rTV++f E e +rf +l+ + kai++ + +++l+++++
W04C9.1 368 TMRTVRSFSCENVEADRFYGKLTHTLDVTRTKAIAYIGFLWVSELFQSFI 417
yalalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
++ +lw+Gg+l v++ + + l++fl++ +ql l
W04C9.1 418 IVSVLWYGGHL---VLTQKMKGDLLVSFLLYQMQLGDNL 453
AIG1: domain 1 of 1, from 527 to 541: score 7.3, E = 0.74
*->rnIVLVGRTGNGKSA<-*
+++ LVG +G GKS+
W04C9.1 527 ETVALVGPSGSGKSS 541
APS_kinase: domain 1 of 1, from 525 to 541: score 4.6, E = 2.9
*->rGctvWfTGLSGsGKST<-*
G tv + G+SGsGKS+
W04C9.1 525 PGETVALVGPSGSGKSS 541
SKI: domain 2 of 2, from 527 to 541: score 3.9, E = 6.1
*->rnifLIGmmGaGKsT<-*
+++ L+G+ G+GKs+
W04C9.1 527 ETVALVGPSGSGKSS 541
DUF258: domain 1 of 1, from 531 to 546: score 3.3, E = 6.3
*->faGqSGVGKSSLiNaL<-*
++G+SG GKSS i++L
W04C9.1 531 LVGPSGSGKSSCISLL 546
ABC_tran: domain 1 of 1, from 526 to 709: score 198.3, E = 2.9e-56
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
Ge++alvGp+G+GKS+ + l+ ++ p +G++l+dG +l +
W04C9.1 526 GETVALVGPSGSGKSSCISLLENFYVPNAGQVLVDG-VPLEEFE--- 568
erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
+++ + + i+ v+Q+p+lf +v en+++g + + e+
W04C9.1 569 HHYIHKK--IALVGQEPVLF---ARSVMENVRYGVEV----ADTEIIRSC 609
kkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklLlL
++a+a+ ++ ++ l+y++ ++++++++SGGqkQR+aiARaL+++p +LlL
W04C9.1 610 EMANAHGFIMQTTLKYETNVGEKGTQMSGGQKQRIAIARALVREPAILLL 659
DEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDrilvle
DE+T++LD +s+ ++e++ + + g++v+li H+l + aD+i+v++
W04C9.1 660 DEATSALDTESEHLVQEAIYKNLD-GKSVILIAHRLST-VEKADKIVVIN 707
dG<-*
+G
W04C9.1 708 KG 709