Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W03A5.1
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Query: W03A5.1 CE29359 status:Partially_confirmed TR:Q23136 protein_id:AAL02528.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 177.9 1.7e-49 1
SH2 SH2 domain 5.1 1.7 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SH2 1/2 189 193 .. 1 5 [. -0.4 1.4e+02
SH2 2/2 393 406 .. 66 79 .] 5.8 0.99
pkinase 1/1 545 808 .. 6 294 .] 177.9 1.7e-49
Alignments of top-scoring domains:
SH2: domain 1 of 2, from 189 to 193: score -0.4, E = 1.4e+02
*->WyhGk<-*
WyhG+
W03A5.1 189 WYHGN 193
SH2: domain 2 of 2, from 393 to 406: score 5.8, E = 0.99
*->gvkFssLpeLvehY<-*
g+++++L++Lv+h
W03A5.1 393 GKRYDTLYDLVHHL 406
pkinase: domain 1 of 1, from 545 to 808: score 177.9, E = 1.7e-49
*->klGeGsfGkVykakhkd..ktgkiVAvKilkkekesikek.rflrEi
++G+G+fG+V+k+k +++ + +VAvK+l ++++s++e++ +++E+
W03A5.1 545 QIGKGAFGTVKKGKFRNslGESVPVAVKKLGLRESSKDERnPAFSEM 591
qilkrLsHpNIvrligvfed.tddhlylvmEymegGdLfdylrrnggpls
+il ++ HpNIv ++g+ ++++ lyl +E+m+ +L +++ + + ls
W03A5.1 592 EILEMVAHPNIVFYYGFSISgDEQALYLLFELMDT-SLDKFIDKSDAILS 640
ekeakkialQilrGleYLHsng..ivHRDLKpeNILlden.....dgtvK
e+e ++i Qi+rG+++LH + ++ivH DL+++N+Ll++++ + +K
W03A5.1 641 ENERLDILAQICRGMSFLHTRTpsIVHGDLAARNVLLKKHpvyikKYICK 690
iaDFGLArlle..sssklttfvGTpwYmmAPEvilegrgysskvDvWSlG
i+D GLA+ ++ ++++++ + p+ +++PEv l +r s k D+W++G
W03A5.1 691 ITDLGLAKTCLdeLYTSYDDPTKIPFKWLPPEV-LGSRTLSLKTDIWAFG 739
viLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridp
++++E++ + ++P+ + p
W03A5.1 740 IVCFEVCDKV-------------------------GEPYGA------CVP 758
leelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeil
+++l + + + g+ ++ + S++ + + +c ++ P +Rp ++ e+
W03A5.1 759 TSNLCQYLTD-GYVHEKGLHMSDTIYNIALDCMRQHPIERP---SFAEL- 803
nhpwf<-*
+ ++
W03A5.1 804 VDQFL 808