Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02G9.4
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Query: W02G9.4 CE18317 status:Partially_confirmed TR:O61901 protein_id:AAC17682.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CUB CUB domain 120.4 3.4e-34 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CUB 1/3 13 66 .. 1 56 [. 30.0 1.3e-07
CUB 2/3 80 113 .. 83 116 .] 14.8 0.004
CUB 3/3 128 234 .. 1 116 [] 80.5 1.8e-22
Alignments of top-scoring domains:
CUB: domain 1 of 3, from 13 to 66: score 30.0, E = 1.3e-07
*->CGgtl.dltessGsisSPnYPnrsdYppnkeCvWrIrappgyrvVeL
C ++ + +++G + SPnYP +Y++n + v++I+ p g ++L
W02G9.4 13 CRAQHlNFDGATGKLYSPNYPG--NYDNNGDVVYTITIPVGNY-IHL 56
tFqdFdlEdh<-*
tF+dF +Ed+
W02G9.4 57 TFLDFLTEDS 66
CUB: domain 2 of 3, from 80 to 113: score 14.8, E = 0.004
*->GsgkPedirStsnrmlikFvsDasvskrGFkAty<-*
G++ + + +++++ F+sD +++ rGF ++y
W02G9.4 80 GDKTGFALDIQASQVTLVFTSDLTNTFRGFLIRY 113
CUB: domain 3 of 3, from 128 to 234: score 80.5, E = 1.8e-22
*->CGgtldltessGsisSPnYPnrsdYppnkeCvWrIrappgyrvVeLt
C+ +l ++ i+SPn+P+ +Yp+n C +I + + ++++
W02G9.4 128 CSSIL-HNSEFDIITSPNFPY--NYPDNISCAFLIKVSADRL-ISFQ 170
FqdFdlEdhdgaCryDyvEirDGdpssspllGrfCGsgkPedirStsnrm
F F++Ed +yD+v ++DG s+pl+G + G+ P++i+Stsn++
W02G9.4 171 FVAFNTED-----GYDVVSVYDGANTSAPLIGHYSGKNMPAPITSTSNTL 215
likFvsDasvskrGFkAty<-*
+ F sD + +GF+ y
W02G9.4 216 YLCFSSDLVTNFSGFSGLY 234