Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02B12.7
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Query: W02B12.7 CE03767 locus:klp-17 kinensin-like protein status:Confirmed TR:Q23124 protein_id:CAA91398.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
kinesin Kinesin motor domain 398.3 7.2e-116 1
HALZ Homeobox associated leucine zipper 5.7 4.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HALZ 1/1 233 258 .. 20 45 .] 5.7 4.2
kinesin 1/1 315 593 .. 1 373 [] 398.3 7.2e-116
Alignments of top-scoring domains:
HALZ: domain 1 of 1, from 233 to 258: score 5.7, E = 4.2
*->endsLqkendeLrAevlslkeklqde<-*
end+L +en L+ e+l+l ++ +
W02B12.7 233 ENDRLIQENRTLKREKLKLINCFKTQ 258
kinesin: domain 1 of 1, from 315 to 593: score 398.3, E = 7.2e-116
*->ktFtFDkVFdpestqefvyeetakPlvesvleGyNgtiFAYGQTGSG
t++F +VF p + q v+ e+ k+l+ +l+G N++++AYG TGSG
W02B12.7 315 NTYSFEHVFFPPTAQSGVFGEI-KELIMCALHGKNVCLIAYGPTGSG 360
KTYTMeGppdsdkegsgnptdsyttpeeepGiiPRaledlFerieerker
KT+TM G ++ ++ G+iPRa++ ++e++++
W02B12.7 361 KTFTMRGEDS---------------ADS-EGVIPRAIRFMLEQSKR---- 390
kgvfPkln...wellnsqetligvsfdrglssdlyvndlefsvrvSylEI
+l +w+ +++ +S++E+
W02B12.7 391 -----DLAmigWN---------------------------YKFQASFIEV 408
YNEkirDLLspsppqagspsksnekkkkpgvpLrireDpkrGgkmdgvyV
YNE+++DLL+ +k++ L+++ ++++ ++V
W02B12.7 409 YNEEVYDLLD---------------GKQK---LEVKINGSK------TNV 434
eGLtevpVssaeevlelLelGnknRtvasTamNerSSRSHaiFtitveqr
+GL+ +++++ ++v +L+l+ ++R+vasTa Ne+SSRSHaiF+i v ++
W02B12.7 435 VGLKKIEIGNISDVDVILNLADSQRSVASTASNEHSSRSHAIFQIFVDGQ 484
nrdsegskvtgkdnsgeesvrvskLnLVDLAGSERaskTgatGAggrRLk
n ++g+ v++ LnLVDLAGSERa+ T+a+ g++ ++
W02B12.7 485 N--ASGEMVQC------------CLNLVDLAGSERAKETQAR--GKQ-FT 517
EganINkSLsaLGnVInALa....HiPYRDSKLTrLLqDSLGGGaNsKTl
E +nIN+SLs+L+++I+A ++ +H+PYRDSKLT++L+++LG G +sKT
W02B12.7 518 ELTNINQSLSTLKKCIRAQMtkmsHVPYRDSKLTMVLREYLGAG-SSKTM 566
MIaniSPsssrNntnyeETlsTLrFAsRAknIk<-*
Ia+ +P ++ ET TL+F s +++
W02B12.7 567 FIAHANPR------DVAETKRTLEFTSELRSTN 593