Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02B12.12
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Query: W02B12.12 CE21239 serine\/threonine kinase status:Partially_confirmed TR:Q23128 protein_id:CAA91402.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 194.0 2.4e-54 1
Methyltransf_7 SAM dependent carboxyl methyltransfera 5.1 2.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Methyltransf_7 1/1 284 306 .. 342 367 .] 5.1 2.5
pkinase 1/1 94 348 .. 1 294 [] 194.0 2.4e-54
Alignments of top-scoring domains:
Methyltransf_7: domain 1 of 1, from 284 to 306: score 5.1, E = 2.5
*->klsehlskenanakktinvvvsLsRk<-*
++++++++++ kk nv+v L+R+
W02B12.12 284 MVTNRMPFDE---KKPNNVIVELQRN 306
pkinase: domain 1 of 1, from 94 to 348: score 194.0, E = 2.4e-54
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkk....ekesikek
+ + klG+G ++kVyka ++ ++++ VAvK ++ ++ +++ ++k
W02B12.12 94 LDTSNKLGRGKYSKVYKAFDR-NNNRVVAVKAIDTqeltTDVKMKF- 138
rflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrn
+ rE++ ++L+ p++v l+ +e + + l mEy GdL++y++++
W02B12.12 139 -LPRELSCWRKLKNPFVVGLHAQYE-AQSMIFLTMEYGSQGDLLRYVQEH 186
ggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKia
g + e+ a +++Q+ rGl+++Hs +i HRD+K eNI l +n vK++
W02B12.12 187 G-GIHEQKAGLFMSQLIRGLQFMHSINIAHRDIKLENIILFDN--CVKLS 233
DFGLArllesssklttfvGTpwYmmAPEvileg.rgysskvDvWSlGviL
DFG+ r+++ s +tf+G+ Y APE+ l+g + +DvWSlGv+
W02B12.12 234 DFGFVRKMDESALSSTFCGSKSYS-APEL-LRGiVYNPFLSDVWSLGVVG 281
yElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridplee
+ ++t + Pf++ ++p +
W02B12.12 282 FVMVTN--------------------------RMPFDE------KKPNNV 299
lfriikrpglrlplpsncSee..lkdLlkkcLnkDPskRpGsatakeiln
+++++++ + + +p+++ ++++++ +++ ++D +Rp t +++l+
W02B12.12 300 IVELQRN--RQYVIPHSVFLStsCISSFESMMAFDTRNRP---TSTDCLA 344
hpwf<-*
pw+
W02B12.12 345 LPWI 348