hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W02B12.11
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Query:  W02B12.11  CE25132   n-acetyllactosamine synthase status:Partially_confirmed TR:Q21608 protein_id:CAA91401.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Galactosyl_T_2 Galactosyltransferase                    583.8   7.1e-181   1
Xylose_isom    Xylose isomerase                           5.0        1.4   1
SPK            Domain of unknown function (DUF545)        4.8        5.3   1
Tfb2           Transcription factor Tfb2                 -0.2        3.3   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
SPK              1/1     172   182 ..     1    11 [.     4.8      5.3
Tfb2             1/1     179   190 ..     1    14 [.    -0.2      3.3
Xylose_isom      1/1     213   238 ..    57    82 ..     5.0      1.4
Galactosyl_T_2   1/1     109   381 ..     1   329 []   583.8 7.1e-181

Alignments of top-scoring domains:
SPK: domain 1 of 1, from 172 to 182: score 4.8, E = 5.3
                   *->aeltrfmdFLv<-*
                      ++ltr++dFL+
   W02B12.11   172    THLTRLIDFLI    182

Tfb2: domain 1 of 1, from 179 to 190: score -0.2, E = 3.3
                   *->dFLetipspvlqRL<-*
                      dFL+ i++  +qRL
   W02B12.11   179    DFLIPILQ--RQRL    190

Xylose_isom: domain 1 of 1, from 213 to 238: score 5.0, E = 1.4
                   *->avfelaeklnayyfcFHDrDlaPeGs<-*
                      a+f +ae l+++ + FHD+D  P ++
   W02B12.11   213    AAFIFAESLGVDCVVFHDVDMFPQDD    238

Galactosyl_T_2: domain 1 of 1, from 109 to 381: score 583.8, E = 7.1e-181
                   *->CPersPillLvGpllisfssiqfltleelaaenPevepGGryrPrdC
                      CP++++i++L+G+l+++++ iq+l+++e++a++Pe++pGG+++P+dC
   W02B12.11   109    CPIVEKIPDLQGALPQATLLIQNLQEGEVHAIHPELGPGGSWKPDDC 155

                   kpSrqKvAiIIPyRnReeHLryLlphLhPfLqRQrLdfgiyVIeQtgpet
                   ++ r+K+A+IIPyR+R++HL++L+++L+P+LqRQrLdf+++V+eQ+g++
   W02B12.11   156 QA-RDKIAVIIPYRERQTHLTRLIDFLIPILQRQRLDFRFIVTEQYGNDL 204

                   FNRAkLlNVGflEAlKegnwDCfifHDVDLlPedDrNlYkCpemGPRHla
                   FN+++++N++f++A+++g+ DC++fHDVD++P+dDrN+Y+Cp++ PRHl+
   W02B12.11   205 FNKGRIMNAAFIFAESLGV-DCVVFHDVDMFPQDDRNPYSCPPG-PRHLG 252

                   vavdkfgYkLpYkeyFGGVsaLtreQFrKiNGfsNeYWGWGGEDDDlynR
                   ++v+++gY+L+Yke++GGV+a++++++r++NG+sN++W+WGGEDDD+++R
   W02B12.11   253 AFVSNLGYQLWYKEIVGGVLAVSMADYRAVNGYSNQFWAWGGEDDDMGQR 302

                   vvlagmkisRPeGletGkYkMikHvkgGWnvnPrdrgnesLYDmLnkaLG
                   +++++++i+RP+ +etG+Y+M+kHvk       r+r+++
   W02B12.11   303 ILSLNYTIERPN-PETGRYSMLKHVK-------RKRTAP----------- 333

                   vqaGWnvhPnskWPLRLFDsvnhaPaeGaGytpnpeRfklleksrerqhv
                                                   ++++++ ++  s++r+++
   W02B12.11   334 --------------------------------KLIYKLLGN--SANRVAY 349

                   DGLnslrYqivlkveldpLYtniTVdigalpe<-*
                   DGLn++++++++kv+++pLY++++Vd+g++pe
   W02B12.11   350 DGLNETDKWTIRKVTTRPLYYHLYVDVGPVPE    381

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