Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02A2.6
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Query: W02A2.6 CE21236 locus:rec-8 status:Partially_confirmed TR:Q9XUB3 protein_id:CAB05309.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein 172.2 4e-51 1
DUF173 Uncharacterised ACR, COG1354 12.3 0.02 1
Phage_F Capsid protein (F protein) 2.0 7.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Rad21_Rec8_N 1/1 1 114 [. 1 136 [] 172.2 4e-51
Phage_F 1/1 208 230 .. 1 23 [. 2.0 7.7
DUF173 1/1 729 776 .. 226 283 .] 12.3 0.02
Alignments of top-scoring domains:
Rad21_Rec8_N: domain 1 of 1, from 1 to 114: score 172.2, E = 4e-51
*->MFYshfvLskeKGPLakIWLAAiLGtghwekKLkKkqvletdIpetc
M++s++v++k +++++++W iLGtg++ kKL+++++l++++pe+c
W02A2.6 1 MVVSAEVIRK-DAVFHVAW---ILGTGDS-KKLSRREILDQNLPELC 42
eeIlnpvlvRVvPererGsevdplALRlSghLLlGVVRiYsrKvkyLldD
++I+++ vPer+rGs++ +++L+l++ L++G+V+i++++v++L++D
W02A2.6 43 HSIIEM-----VPERHRGSAT-KTGLYLLSLLTYGTVLIHQVQVDFLKRD 86
cneallklkkaFrsgqkdfevdlPeenrtarinsnltlP<-*
++++++ +kk k+f+++++e r+++n++l+
W02A2.6 87 VEKLKELMKK------KSFILLMAE-----RFDRNQELQ 114
Phage_F: domain 1 of 1, from 208 to 230: score 2.0, E = 7.7
*->skvqtlasrmphdfShlpfahiq<-*
++ + +++++ dfS+l f i+
W02A2.6 208 HNKERRNDAVIADFSQLLFPEIP 230
DUF173: domain 1 of 1, from 729 to 776: score 12.3, E = 0.02
*->wisFfeLvkdcHHHLDPnhliskkdlVgaFlALLeLannqkVeleQe
w++F e+ +d ++k ++aF LL+ +n kVe Qe
W02A2.6 729 WVNFNEFTAD----------HDRKKAATAFEGLLLSLKNMKVEAKQE 765
effgdlyiqll<-*
+++ ++++ +
W02A2.6 766 DPYFPILVRHI 776